Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,373,635 G→C Y200* (TAC→TAG yjeJ ← uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,373,6350GC100.0% 399.4 / NA 111Y200* (TAC→TAGyjeJuncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (54/57);  total (54/57)

Only 100 of 113 total aligned reads displayed.

CGAGTTTTTTCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGGTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAGGTAATACGT  >  NC_000913/4373502‑4373770
                                                                                                                                     |                                                                                                                                       
cgAGTTTTTTCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    >  1:1847046/1‑139 (MQ=255)
caaGTTTTTTCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    >  1:1127462/3‑139 (MQ=255)
   gTTTTTTCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCAc                                                                                                                                 <  2:1653843/139‑1 (MQ=255)
      ttttCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGc                                                                                                                              <  2:1298952/139‑1 (MQ=255)
          cAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGa                                                                                                                          <  2:1847046/139‑1 (MQ=255)
              cGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAAt                                                                                                                      <  2:265463/139‑1 (MQ=255)
                 gggCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGc                                                                                                                              <  1:748024/128‑1 (MQ=255)
                 gggCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGc                                                                                                                              >  2:748024/1‑128 (MQ=255)
                       aaaTCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGt                                                                                                                   <  1:356812/133‑1 (MQ=255)
                       aaaTCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGt                                                                                                                   >  2:356812/1‑133 (MQ=255)
                                 ttCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    <  2:1590299/106‑1 (MQ=255)
                                 ttCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    >  1:1590299/1‑106 (MQ=255)
                                 ttCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    >  2:1127711/1‑106 (MQ=255)
                                 ttCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGttt                                                                                                   >  1:1095872/1‑139 (MQ=255)
                                    ggCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  <  1:1698276/105‑1 (MQ=255)
                                    ggCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCa                                                                                                >  2:1317367/1‑139 (MQ=255)
                                    ggCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCa                                                                                                >  2:1874571/1‑139 (MQ=255)
                                    ggCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCa                                                                                                >  2:1739416/1‑139 (MQ=255)
                                            aTCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              >  2:1683399/1‑133 (MQ=255)
                                            aTCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              <  1:1683399/133‑1 (MQ=255)
                                                cTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGc                                                                                                                              >  1:1687123/1‑97 (MQ=255)
                                                cTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGc                                                                                                                              <  2:1687123/97‑1 (MQ=255)
                                                   cTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCACTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGt                                                                                                                   <  2:154755/105‑1 (MQ=255)
                                                    tATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAg                                                                                >  2:1772334/1‑139 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  >  1:1003215/1‑82 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  <  2:1003215/82‑1 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        >  2:1059057/1‑108 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        <  1:1059057/108‑1 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCata                                                                        >  1:1755398/1‑139 (MQ=255)
                                                           ttACCCGGCGTTGCTTCACGCGTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCata                                                                        >  1:576521/1‑139 (MQ=255)
                                                            tACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGaa                                                                                   <  1:56/128‑1 (MQ=255)
                                                            tACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGaa                                                                                   >  2:56/1‑128 (MQ=255)
                                                              cccGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATAtt                                                                      >  2:957624/1‑139 (MQ=255)
                                                                cGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTcc                                                                    >  1:1265477/1‑139 (MQ=255)
                                                                  gCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCg                                                                                                                               <  2:154561/78‑1 (MQ=255)
                                                                  gCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCg                                                                                                                               >  1:154561/1‑78 (MQ=255)
                                                                   cGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  <  2:134445/74‑1 (MQ=255)
                                                                   cGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  >  1:134445/1‑74 (MQ=255)
                                                                   cGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              >  2:157478/1‑110 (MQ=255)
                                                                   cGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              <  1:157478/110‑1 (MQ=255)
                                                                   cGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGa                                                                 >  1:845114/1‑139 (MQ=255)
                                                                    gTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCg                                                                                                                 <  2:304984/90‑1 (MQ=255)
                                                                    gTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCg                                                                                                                 >  1:304984/1‑90 (MQ=255)
                                                                       gCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGc                                                             <  1:1368596/139‑1 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCg                                                                                                                 <  1:270255/86‑1 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGcc                                                            <  2:462689/139‑1 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGcc                                                            <  2:1409124/139‑1 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGcc                                                            >  1:484128/1‑139 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGcc                                                            <  1:1874571/139‑1 (MQ=255)
                                                                        cTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGcc                                                            <  2:529802/139‑1 (MQ=255)
                                                                                gTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  >  1:471953/1‑61 (MQ=255)
                                                                                 ttttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTg                                                   <  2:484128/139‑1 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCAc                                                                                                                                 <  1:968638/60‑1 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCAc                                                                                                                                 >  2:362944/1‑60 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCAc                                                                                                                                 >  2:968638/1‑60 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATa                                                                                                                        <  2:1788389/69‑1 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATa                                                                                                                        >  1:1788389/1‑69 (MQ=255)
                                                                                  tttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTgg                                                  >  1:342678/1‑139 (MQ=255)
                                                                                   ttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    >  2:921469/1‑56 (MQ=255)
                                                                                   ttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAg                                                                                                                                    <  1:921469/56‑1 (MQ=255)
                                                                                   ttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAAt                                                                                  <  2:1111092/106‑1 (MQ=255)
                                                                                   ttCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAAt                                                                                  >  1:1111092/1‑106 (MQ=255)
                                                                                      accacTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGt                                              <  1:1317367/139‑1 (MQ=255)
                                                                                          cTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGAt                                                                                                                         <  2:913228/60‑1 (MQ=255)
                                                                                          cTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGAt                                                                                                                         >  1:913228/1‑60 (MQ=255)
                                                                                            gcgcCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  >  2:41557/1‑49 (MQ=255)
                                                                                            gcgcCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCa                                                                                                                                  <  1:41557/49‑1 (MQ=255)
                                                                                             cgccgcTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGt                                                                                                                   <  1:611069/63‑1 (MQ=255)
                                                                                             cgccgcTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGt                                                                                                                   >  2:611069/1‑63 (MQ=255)
                                                                                                 gcTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGtat                                   <  2:311093/139‑1 (MQ=255)
                                                                                                  cTAAATTGTTCTTTACCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGtata                                  >  1:1305861/1‑139 (MQ=255)
                                                                                                     aaTTGTTCTTTACCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACg                               <  2:1305861/139‑1 (MQ=255)
                                                                                                        tGTTCTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCa                            <  2:342678/139‑1 (MQ=255)
                                                                                                          ttCTTTGCCACTTTCATCCTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAgg                          <  2:1265477/139‑1 (MQ=255)
                                                                                                            cTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCa                                                >  2:66430/1‑115 (MQ=255)
                                                                                                            cTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCa                                                <  1:66430/115‑1 (MQ=255)
                                                                                                            cTTTGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGaa                        >  1:1200335/1‑139 (MQ=255)
                                                                                                               tGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        >  1:812922/1‑56 (MQ=255)
                                                                                                               tGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCAt                                                          <  2:1013897/102‑1 (MQ=255)
                                                                                                               tGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCAt                                                          >  1:1013897/1‑102 (MQ=255)
                                                                                                               tGCCACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATc                     >  2:464233/1‑139 (MQ=255)
                                                                                                                  cACTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTaa                  <  2:1095872/139‑1 (MQ=255)
                                                                                                                    cTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCaa                                           >  2:1108252/1‑112 (MQ=255)
                                                                                                                    cTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCaa                                           <  1:1108252/112‑1 (MQ=255)
                                                                                                                    cTTTCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACa                >  1:938467/1‑139 (MQ=255)
                                                                                                                      ttCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGt              <  2:845114/139‑1 (MQ=255)
                                                                                                                      ttCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGt              <  2:938467/139‑1 (MQ=255)
                                                                                                                      ttCATCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGt              <  1:1739416/139‑1 (MQ=255)
                                                                                                                         aTCTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTg             >  2:778684/1‑137 (MQ=255)
                                                                                                                           cTTTAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAGGt         >  1:838914/1‑139 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        >  2:977654/1‑41 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        >  2:1345240/1‑41 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        <  1:977654/41‑1 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTa                                                                                                        <  1:1345240/41‑1 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAg           <  2:1572166/134‑1 (MQ=255)
                                                                                                                              tAAAGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAg           >  1:1572166/1‑134 (MQ=255)
                                                                                                                                 aGCGCTAAAGCACCGCCTGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              >  1:1077023/1‑48 (MQ=255)
                                                                                                                                 aGCGCTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCAtt                                                                                              <  2:1077023/48‑1 (MQ=255)
                                                                                                                                  gcgcTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAGGTAATACGt  <  2:576521/139‑1 (MQ=255)
                                                                                                                                  gcgcTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAGGTAATACGt  <  2:1755398/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CGAGTTTTTTCAGTCGTGGGCTGAAATCAAGCATTCGGCGAGTGATCGCTTCTATTTCTTTACCCGGCGTTGCTTCACGCGTTTTCACCACTGCGCCGCTAAATTGTTCTTTGCCACTTTCATCTTTAAAGCGGTAAAGCACCGCCAGATAATGGTCGAACAAGTTATGTTTCCATTCCGGTTGGGAATAGGTGTCATATTCCAGATTGCCATTGTCCTGGCAGTCAACGTCGTATAACGGCAGGAAATCTAACAGTGAGGTAATACGT  >  NC_000913/4373502‑4373770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: