Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 883,665 IS1 (–) +9 bp [mdfA] [mdfA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 19796 =NA (NA)63 (1.170) 42/210 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 883673 0 (0.000)coding (1/1233 nt) mdfA multidrug efflux system protein
* ? NC_000913 = 258675NA (NA)55 (1.020) 43/210 0.2 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 883665 = 0 (0.000)intergenic (‑277/‑8) ybjG/mdfA undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein

Only 100 of 120 total aligned reads displayed.

AACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAAT  >  NC_000913/883539‑883811
                                                                                                                                      |                                                                                                                                          
gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatgca                                                                                                                                        >  2:1142635‑M2/127‑139 (MQ=255)
aaCTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggta                                                                                                                                        >  1:644335‑M2/1‑135 (MQ=255)
        gaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                                >  2:295765‑M2/1‑127 (MQ=255)
              acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCtt                                                                                                                          >  2:525199‑M2/113‑139 (MQ=255)
               cgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTc                                                                                                                         <  1:1098239‑M2/28‑1 (MQ=255)
                   tataCTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                                     >  1:1132636‑M2/1‑116 (MQ=255)
                    ataCTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgata                                                                                                                    >  1:506810‑M2/1‑115 (MQ=255)
                          gTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt                                                                                                              <  1:260168‑M2/139‑31 (MQ=255)
                            aataatGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaat                                                                                                                                      >  1:1166751‑M2/1‑107 (MQ=255)
                            aataatGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaat                                                                                                                                      <  2:1166751‑M2/113‑7 (MQ=255)
                                 tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                                >  2:907851‑M2/1‑102 (MQ=255)
                                 gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                                           >  2:30388‑M2/94‑135 (MQ=255)
                                 gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTg                                                                                                           <  1:30388‑M2/42‑1 (MQ=255)
                                    aaGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagt                                                                                                                  <  2:1228155‑M2/125‑27 (MQ=255)
                                    aaGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa                                                                                                                              >  2:557123‑M2/1‑99 (MQ=255)
                                    aaGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa                                                                                                                              <  1:557123‑M2/113‑15 (MQ=255)
                                         tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttt                                                                                                             >  1:870846‑M2/1‑94 (MQ=255)
                                         tgtgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttt                                                                                                             <  2:870846‑M2/125‑32 (MQ=255)
                                         ggagggacagctgatagaaacagaagccactggagcacctcaaaaacacaatcatacattaactcagtaagttggcagcatcaccGAAATTGCATGCAACATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGt                                                                                               >  1:339455‑M2/86‑139 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                             <  1:134547‑M2/139‑48 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt                                                                                                        <  2:678936‑M2/128‑37 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt                                                                                                        >  1:678936‑M2/1‑92 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaac                                                                                                                             <  2:772632‑M2/107‑16 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaac                                                                                                                             >  1:772632‑M2/1‑92 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgact                                                                                                                                  <  2:1167106‑M2/102‑11 (MQ=255)
                                           tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgact                                                                                                                                  >  1:1167106‑M2/1‑92 (MQ=255)
                                             cTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc                                                                                                                                >  2:382733‑M2/1‑90 (MQ=255)
                                                 aCCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaa                                                                                                                                       >  1:819933‑M2/1‑86 (MQ=255)
                                                 aCCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaa                                                                                                                                       <  2:819933‑M2/91‑6 (MQ=255)
                                                  gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTcc                                                                                      >  1:527583‑M2/77‑139 (MQ=255)
                                                     tGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                   <  1:626783‑M2/139‑58 (MQ=255)
                                                      atagaaacagaagccactggagcacctcaaaaacaccatcatacattaattcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                                  <  1:863683‑M2/67‑1 (MQ=255)
                                                       gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                 <  2:255644‑M2/139‑60 (MQ=255)
                                                       gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                                     <  1:85600‑M2/103‑24 (MQ=255)
                                                       gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat                                                                                                                     >  2:85600‑M2/1‑80 (MQ=255)
                                                         ttCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                               >  1:255644‑M2/1‑78 (MQ=255)
                                                            aGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                            <  1:195004‑M2/139‑65 (MQ=255)
                                                                aagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTc                                                                                                                         >  1:197124‑M2/63‑90 (MQ=255)
                                                                aagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTg                                                                        >  1:495132‑M2/63‑139 (MQ=255)
                                                                 cAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                       >  2:195004‑M2/1‑70 (MQ=255)
                                                                     actggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTa                                                                   >  1:516675‑M2/58‑139 (MQ=255)
                                                                        ggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                                  >  1:1188102‑M2/55‑121 (MQ=255)
                                                                        ggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                                  <  2:1188102‑M2/67‑1 (MQ=255)
                                                                        cGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt                                                                                                        >  2:731026‑M2/1‑63 (MQ=255)
                                                                            cacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAAttt                                                            >  2:432285‑M2/51‑139 (MQ=255)
                                                                              cctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTc                                                          >  2:945909‑M2/49‑139 (MQ=255)
                                                                               ctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGtt                                                                                              >  1:644839‑M2/48‑102 (MQ=255)
                                                                               ctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGtt                                                                                              <  2:644839‑M2/55‑1 (MQ=255)
                                                                               ctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCa                                                         >  2:792301‑M2/48‑139 (MQ=255)
                                                                                tcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCaa                                                        <  1:792301‑M2/93‑1 (MQ=255)
                                                                                cGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagt                                                                                                                  >  1:972131‑M2/1‑55 (MQ=255)
                                                                                 caaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAAtttt                                                           <  2:1008002‑M2/90‑1 (MQ=255)
                                                                                 caaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAAtttt                                                           >  1:1008002‑M2/46‑135 (MQ=255)
                                                                                       caccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTatat                                                 <  1:1142635‑M2/100‑1 (MQ=255)
                                                                                       caccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTatat                                                 <  2:495132‑M2/100‑1 (MQ=255)
                                                                                         ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTgg                                                                          >  2:868801‑M2/38‑112 (MQ=255)
                                                                                         ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTgg                                                                          <  1:868801‑M2/75‑1 (MQ=255)
                                                                                         ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCg                                               >  1:1196381‑M2/38‑139 (MQ=255)
                                                                                            tcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCa                                            >  2:16418‑M2/35‑139 (MQ=255)
                                                                                             catacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCaa                                           <  1:641482‑M2/106‑1 (MQ=255)
                                                                                                 cattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGat                                       <  1:858401‑M2/110‑1 (MQ=255)
                                                                                                  attaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGata                                      <  1:16418‑M2/111‑1 (MQ=255)
                                                                                                     aCTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccag                                   >  2:626783‑M2/1‑34 (MQ=255)
                                                                                                     aCTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccag                                   >  2:134547‑M2/1‑34 (MQ=255)
                                                                                                      ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttta                                                                                                            >  1:503123‑M2/1‑33 (MQ=255)
                                                                                                      ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttta                                                                                                            <  2:503123‑M2/65‑33 (MQ=255)
                                                                                                      aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg                                                                                                <  1:590057‑M2/53‑1 (MQ=255)
                                                                                                      aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg                                                                                                >  2:590057‑M2/25‑77 (MQ=255)
                                                                                                      aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAt                                  >  2:312602‑M2/25‑139 (MQ=255)
                                                                                                       atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa                                                                                                         <  2:220170‑M2/44‑1 (MQ=255)
                                                                                                       atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGa                                                                                                         >  1:220170‑M2/24‑67 (MQ=255)
                                                                                                       atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAtt                                 <  1:312602‑M2/116‑1 (MQ=255)
                                                                                                         tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt                                                                                                        >  1:1283205‑M2/1‑30 (MQ=255)
                                                                                                         tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt                                                                                                        <  2:1283205‑M2/66‑37 (MQ=255)
                                                                                                           cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                          <  2:661261‑M2/78‑51 (MQ=255)
                                                                                                           cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                          >  1:661261‑M2/1‑28 (MQ=255)
                                                                                                            taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                                  <  2:295530‑M2/67‑1 (MQ=255)
                                                                                                            taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct                                                                                  >  1:295530‑M2/19‑85 (MQ=255)
                                                                                                            taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGat                                       <  1:1047279‑M2/110‑1 (MQ=255)
                                                                                                            taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGat                                       >  2:1047279‑M2/19‑128 (MQ=255)
                                                                                                            taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAAcc                            >  2:200457‑M2/19‑139 (MQ=255)
                                                                                                                  ggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAt                                  <  1:1114973‑M2/115‑1 (MQ=255)
                                                                                                                  ggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAt                                  >  2:1114973‑M2/13‑127 (MQ=255)
                                                                                                                   ttattGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga                                                                                       <  2:905451‑M2/73‑54 (MQ=255)
                                                                                                                   ttattGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga                                                                                       >  1:905451‑M2/1‑20 (MQ=255)
                                                                                                                       tGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct                 >  2:665882‑M2/1‑16 (MQ=255)
                                                                                                                        atcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCtat                                                   >  1:335176‑M2/7‑104 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcag              <  2:609784‑M2/139‑127 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                       <  2:768806‑M2/130‑118 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                       <  2:1133542‑M2/130‑118 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacattgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                       >  1:768806‑M2/1‑13 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgt                                                                                                         <  1:210084‑M2/48‑36 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgt                                                                                                         >  2:210084‑M2/1‑13 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatattcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct                 >  2:31193‑M2/1‑13 (MQ=255)
                                                                                                                          cGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatattcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct                 <  1:31193‑M2/136‑124 (MQ=255)
                                                                                                                               aaaTTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCgtggtg         >  2:1000146/1‑139 (MQ=255)
                                                                                                                                   tgcatgcaAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAAc     <  1:432285/139‑1 (MQ=255)
                                                                                                                                    gcatgcaAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTAc                                                                  <  2:552836/77‑1 (MQ=255)
                                                                                                                                    gcatgcaAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTAc                                                                  >  1:552836/1‑77 (MQ=255)
                                                                                                                                      aggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg  >  2:260168‑M2/1‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                          
AACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGGTGGAACAAT  >  NC_000913/883539‑883811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.