| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,862,524 | Δ3 bp | pseudogene (1078‑1080/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3862523 | 2 (0.040) | 63 (1.170) | 43/210 | 0.2 | 96.9% | pseudogene (1081/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| ? | NC_000913 | 3862527 = | 2 (0.040) | pseudogene (1077/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component | |||||
CGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGC > NC_000913/3862390‑3862664 | tgggcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttca < 2:1156808‑M2/2‑1 (MQ=255) gtgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 1:1184754‑M2/137‑139 (MQ=255) tgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacc > 2:231101‑M2/136‑139 (MQ=255) tgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcacc < 1:494650‑M2/4‑1 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 2:570232‑M2/134‑136 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac < 1:570232‑M2/3‑1 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 1:109191‑M2/8‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgctttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa > 2:960520‑M2/128‑139 (MQ=255) ccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAag < 2:302242‑M2/13‑1 (MQ=255) ccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAag < 1:623684‑M2/13‑1 (MQ=255) ccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAag < 1:555590‑M2/13‑1 (MQ=255) acagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACAtt < 1:793731‑M2/22‑1 (MQ=255) agggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt < 2:1189546‑M2/27‑1 (MQ=255) agggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt > 1:713406‑M2/113‑139 (MQ=255) taaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGAc > 2:51696‑M2/109‑139 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg < 1:960520‑M2/41‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg > 1:1016786‑M2/99‑139 (MQ=255) cgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCCCCACACCaa > 2:330085‑M2/91‑101 (MQ=255) cgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaa < 1:330085‑M2/11‑1 (MQ=255) atttgggtcagcatcatatccgcgtgtttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACAtt < 1:688433‑M2/22‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 1:403357‑M2/8‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac > 2:403357‑M2/89‑96 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACAtt > 2:688433‑M2/89‑110 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTGCGGTCGACATTGAGGCCGCCAGCACGGc < 2:535715‑M2/51‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:535715‑M2/89‑139 (MQ=255) cagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCg > 2:416937‑M2/81‑139 (MQ=255) tccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCaa < 1:51696‑M2/69‑1 (MQ=255) cgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACg < 1:1177298‑M2/71‑1 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac < 2:20571‑M2/3‑1 (MQ=255) gcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 1:20571‑M2/68‑70 (MQ=255) ggttgctgaacatcgggatccagttttccggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa < 2:738432‑M2/76‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt > 2:468882‑M2/63‑89 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGt < 1:468882‑M2/27‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaaa > 2:1023840‑M2/63‑139 (MQ=255) ctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGaa < 2:1016786‑M2/81‑1 (MQ=255) acatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAgg < 1:1023840‑M2/85‑1 (MQ=255) ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAagag < 2:822739/63‑1 (MQ=255) ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGT‑‑‑ACACCACACCAAagag > 1:822739/1‑63 (MQ=255) tcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAg > 1:63321‑M2/52‑139 (MQ=255) cgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGTGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAgg > 2:846635‑M2/51‑139 (MQ=255) cgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAgg > 2:44919‑M2/51‑139 (MQ=255) ggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTa > 1:470481‑M2/49‑139 (MQ=255) ttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg < 1:231101‑M2/99‑1 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:63321‑M2/102‑1 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCgtgt > 2:1097409‑M2/36‑90 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCgtgt < 1:1097409‑M2/55‑1 (MQ=255) taaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCgg < 1:224524‑M2/107‑1 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa > 2:540932‑M2/31‑98 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa < 1:540932‑M2/68‑1 (MQ=255) gtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa > 1:1008142‑M2/24‑91 (MQ=255) gtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCa < 2:1008142‑M2/68‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa > 2:177660‑M2/19‑94 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa < 2:484127‑M2/76‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa < 1:177660‑M2/76‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa > 1:484127‑M2/19‑94 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGc > 2:430837‑M2/19‑139 (MQ=255) gacctccgccatgttCACCACACCAAAGTGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAATAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATg < 1:846635‑M2/124‑1 (MQ=255) gacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATg < 2:713406‑M2/124‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTcc < 1:1257365‑M2/114‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTcc > 2:1257365‑M2/10‑123 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AATGAACAgg < 2:565590‑M2/84‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTG‑AATGAACAgg > 1:565590‑M2/10‑93 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:375213‑M2/102‑1 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg > 1:375213‑M2/3‑104 (MQ=255) tCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCGCGGCGTGTACCGCAAACAGAAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGc < 2:641784‑M2/138‑1 (MQ=255) | CGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAGGTTGC > NC_000913/3862390‑3862664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |