| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,605,180 | A→G | S44G (AGC→GGC) | lsrB → | autoinducer 2‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,605,180 | 0 | A | G | 100.0% | 95.7 / NA | 28 | S44G (AGC→GGC) | lsrB | autoinducer 2‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/15); total (13/15) | |||||||||||
TTCATCGCTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAG > NC_000913/1605058‑1605300 | ttCATCGCTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGgcgc > 1:167105/1‑139 (MQ=255) tCGCTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAAGGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGTCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCacaa < 2:392470/139‑1 (MQ=255) cGCTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCacaac > 1:602736/1‑139 (MQ=255) cTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGGGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCAcaacaa < 1:208499/139‑1 (MQ=255) cgcTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGAt > 1:1159050/1‑139 (MQ=255) gCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGTGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGAtg > 1:769478/1‑127 (MQ=255) gCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGAtg < 2:769478/127‑1 (MQ=255) tgCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGgcg > 1:621514/1‑75 (MQ=255) tgCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGgcg < 2:621514/75‑1 (MQ=255) cAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGa < 2:637253/124‑1 (MQ=255) cAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGa > 1:637253/1‑124 (MQ=255) cAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGttt > 2:1244364/1‑139 (MQ=255) gCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTc < 2:1159050/139‑1 (MQ=255) gCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTc < 2:167105/139‑1 (MQ=255) gggCGTATTACATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCCACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAgg < 2:763388/137‑1 (MQ=255) cGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTAc < 2:602736/139‑1 (MQ=255) cATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTacga < 1:837127/97‑1 (MQ=255) cATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTacga > 2:837127/1‑97 (MQ=255) ttATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGAtgt < 2:204606/85‑1 (MQ=255) ttATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGAtgt > 1:204606/1‑85 (MQ=255) ttATTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATtaa > 1:1059346/1‑139 (MQ=255) aTTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCacaa < 2:246907/54‑1 (MQ=255) aTTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCacaa > 1:246907/1‑54 (MQ=255) aTTCCCAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGCTGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATtaata > 1:744894/1‑139 (MQ=255) cAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAg > 1:750981/1‑105 (MQ=255) cAAACTGGTTGGCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCCACAGAATCCAg < 2:750981/105‑1 (MQ=255) ttGGCGTGGAATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGtcaatca < 2:869442/139‑1 (MQ=255) ggCGTGGGATTTTTTACCGGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAg < 2:1059346/139‑1 (MQ=255) | TTCATCGCTTTAAGAAAATCGCCTTACTTAGCGCTCTTGGCATTGCCGCAATCTCTATGAATGTGCAGGCCGCAGAGCGTATTGCATTTATTCCCAAACTGGTTGGCGTGGGATTTTTTACCAGCGGTGGCAACGGCGCACAACAAGCGGGTAAAGAGCTGGGCGTTGATGTGACCTACGACGGGCCGACAGAACCCAGTGTTTCTGGTCAGGTACAGTTGATTAATAACTTCGTCAATCAAG > NC_000913/1605058‑1605300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |