Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,078,042 G→A pseudogene (103/168 nt) yeeW → CP4‑44 prophage, uncharacterized protein,Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,078,0420GA100.0% 865.3 / NA 263pseudogene (103/168 nt)yeeWCP4‑44 prophage, uncharacterized protein,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (136/127);  total (136/127)

Only 100 of 263 total aligned reads displayed.

ATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAA  >  NC_000913/2077906‑2078176
                                                                                                                                        |                                                                                                                                      
      ttACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                <  2:1122398/139‑1 (MQ=255)
        aCCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaaaa                                                                                                                              <  2:889353/139‑1 (MQ=255)
         cccTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCt                                                                                                                                   >  1:1039135/1‑133 (MQ=255)
         cccTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAAc                                                                                                                             >  1:854857/1‑139 (MQ=255)
          ccTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACg                                                                                                                            <  1:3645/139‑1 (MQ=255)
            tGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCg                                                                                                                                     >  2:710225/1‑128 (MQ=255)
            tGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCg                                                                                                                                     <  1:710225/128‑1 (MQ=255)
                   gTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                >  1:913131/1‑126 (MQ=255)
                    tATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACt                                                                                                                  >  2:502140/1‑139 (MQ=255)
                    tATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACt                                                                                                                  <  2:854857/139‑1 (MQ=255)
                      tCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTcc                                                                                                                >  2:450339/1‑139 (MQ=255)
                         ggAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             <  1:528458/139‑1 (MQ=255)
                                aaaTGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGa                                                                                                      <  1:787396/139‑1 (MQ=255)
                                                        gCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcg                                                                                                               <  1:817154/106‑1 (MQ=255)
                                                        gCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcg                                                                                                               >  2:817154/1‑106 (MQ=255)
                                                         cGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                >  1:208924/1‑88 (MQ=255)
                                                          gTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            <  1:739595/139‑1 (MQ=255)
                                                               cGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACt                                                                       <  1:428450/139‑1 (MQ=255)
                                                                       cgcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAg                                                               <  1:439336/139‑1 (MQ=255)
                                                                        gcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  2:757823/1‑92 (MQ=255)
                                                                        gcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGc                                                              >  1:691006/1‑139 (MQ=255)
                                                                        gcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGc                                                              <  2:808024/139‑1 (MQ=255)
                                                                                tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  >  1:123945/1‑127 (MQ=255)
                                                                                tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  <  2:123945/127‑1 (MQ=255)
                                                                                  gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:1356105/139‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACt                                                                                                                  <  2:198612/73‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCgt                                                                                                            >  1:878600/1‑79 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCgt                                                                                                            <  2:878600/79‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            <  1:791633/111‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  2:1214011/1‑135 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:1286135/1‑135 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:1214011/135‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:1286135/135‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:1023663/135‑1 (MQ=255)
                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCt                                                >  1:1359071/1‑139 (MQ=255)
                                                                                       caTTGTCGTTGACATTGATGGTGGTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTg                                               >  1:565369/1‑139 (MQ=255)
                                                                                        aTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAAc                                                                        >  2:565803/1‑113 (MQ=255)
                                                                                          tGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAg                                                               >  2:1018087/1‑120 (MQ=255)
                                                                                            tCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                <  2:671799/53‑1 (MQ=255)
                                                                                            tCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          <  2:1418478/139‑1 (MQ=255)
                                                                                            tCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          <  1:1395291/139‑1 (MQ=255)
                                                                                             cGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:1001078/128‑1 (MQ=255)
                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACt                                                                       >  2:429917/1‑105 (MQ=255)
                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATg                                     <  1:1143226/139‑1 (MQ=255)
                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATg                                     >  1:1382113/1‑139 (MQ=255)
                                                                                                  aCATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGActc                                                                                          <  2:1100198/85‑1 (MQ=255)
                                                                                                  aCATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          <  1:1352547/133‑1 (MQ=255)
                                                                                                    aTTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAg                                  <  2:38606/139‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCg                                                                                                                                     >  1:63586/1‑38 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCg                                                                                                                                     <  2:63586/38‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                >  2:125845/1‑43 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACt                                                                       >  1:1181592/1‑100 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACt                                                                       <  2:1181592/100‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  <  2:398452/105‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:1036942/119‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  2:1036942/1‑119 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACaa                                       >  1:1073078/1‑132 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACaa                                       <  2:1073078/132‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAg                                  <  1:66343/137‑1 (MQ=255)
                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                >  1:547504/1‑139 (MQ=255)
                                                                                                        aTGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGAc                                                                                            <  1:390778/77‑1 (MQ=255)
                                                                                                         tGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATa                             <  1:452450/139‑1 (MQ=255)
                                                                                                           gtgtTAATATCACGAAACTGATTAATAAGACCGCTGAAACCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTGACCAGTTGCTGTAAGACAATGCAGTGATACa                           <  2:367872/139‑1 (MQ=255)
                                                                                                            tgtTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACaa                                       >  2:563802/1‑126 (MQ=255)
                                                                                                            tgtTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                >  1:731292/1‑133 (MQ=255)
                                                                                                              ttAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:33672/111‑1 (MQ=255)
                                                                                                              ttAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:33672/1‑111 (MQ=255)
                                                                                                              ttAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          >  1:958029/1‑121 (MQ=255)
                                                                                                              ttAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAggg                        >  1:1425680/1‑139 (MQ=255)
                                                                                                              ttAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAggg                        >  2:773604/1‑139 (MQ=255)
                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGta                      <  1:676995/139‑1 (MQ=255)
                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGta                      >  2:1383588/1‑139 (MQ=255)
                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGta                      <  2:1030383/139‑1 (MQ=255)
                                                                                                                     cACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             <  1:1258931/47‑1 (MQ=255)
                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGAc                                                                                            <  2:467306/63‑1 (MQ=255)
                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGAc                                                                                            >  1:467306/1‑63 (MQ=255)
                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  2:691760/1‑103 (MQ=255)
                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGtata                    <  1:771202/135‑1 (MQ=255)
                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGc                >  2:546263/1‑139 (MQ=255)
                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            <  1:111180/77‑1 (MQ=255)
                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACa                           >  1:265683/1‑126 (MQ=255)
                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACa                           <  2:265683/126‑1 (MQ=255)
                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa              >  1:297351/1‑139 (MQ=255)
                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  2:521989/1‑42 (MQ=255)
                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                <  2:924465/119‑1 (MQ=255)
                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                >  1:924465/1‑119 (MQ=255)
                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                <  2:1063188/119‑1 (MQ=255)
                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCAtt            <  2:1356461/139‑1 (MQ=255)
                                                                                                                            ctgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTa                                             >  1:188626/1‑104 (MQ=255)
                                                                                                                             tgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAAc         <  2:1425680/139‑1 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAAc                                                                        <  1:290553/74‑1 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAAc                                                                        >  2:290553/1‑74 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:146393/1‑94 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACa                           >  2:1318537/1‑119 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGtata                    >  2:170884/1‑126 (MQ=255)
                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGcc               <  2:791249/131‑1 (MQ=255)
                                                                                                                                ttAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACcac      <  1:506806/139‑1 (MQ=255)
                                                                                                                                    taaGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  <  2:215318/75‑1 (MQ=255)
                                                                                                                                    taaGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCa                                                                <  1:23278/77‑1 (MQ=255)
                                                                                                                                    taaGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCa                                                                >  2:23278/1‑77 (MQ=255)
                                                                                                                                        |                                                                                                                                      
ATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAA  >  NC_000913/2077906‑2078176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: