| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,475,251 | T→C | Y90H (TAT→CAT) | yfdR → | CPS‑53 (KpLE1) prophage, conserved protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,475,251 | 0 | T | C | 100.0% | 257.8 / NA | 72 | Y90H (TAT→CAT) | yfdR | CPS‑53 (KpLE1) prophage, conserved protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/37); total (35/37) | |||||||||||
TCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACTATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCG > NC_000913/2475123‑2475374 | tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:80416/1‑139 (MQ=255)tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:1398641/1‑139 (MQ=255)tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 1:293305/1‑139 (MQ=255)tCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGAt > 2:83440/1‑139 (MQ=255) gCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATgg > 2:154954/1‑139 (MQ=255) cccAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGga > 2:1383517/1‑139 (MQ=255) aaCATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGgaaga < 1:441992/139‑1 (MQ=255) cGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt < 2:80416/139‑1 (MQ=255) tGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGa < 1:1053555/139‑1 (MQ=255) gCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGt < 1:83440/139‑1 (MQ=255) gCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGt < 1:154954/139‑1 (MQ=255) cTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTg < 1:196380/139‑1 (MQ=255) aaTTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 2:293305/139‑1 (MQ=255) aaTTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 1:698008/139‑1 (MQ=255) tttGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc < 1:1270759/139‑1 (MQ=255) gCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc < 2:441774/139‑1 (MQ=255) ttGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc < 1:1083337/132‑1 (MQ=255) ttGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAc > 2:1083337/1‑132 (MQ=255) gCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGGAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCa < 2:1398641/139‑1 (MQ=255) cATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAg < 1:667545/139‑1 (MQ=255) tgCAACAGAAGCGTATTGCCAGGACATGCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt > 2:853627/1‑81 (MQ=255) tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAAt < 1:853627/81‑1 (MQ=255) tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa > 1:474132/1‑128 (MQ=255) tgCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa < 2:474132/128‑1 (MQ=255) gCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAat < 1:1383517/139‑1 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGaaaaa < 1:549347/76‑1 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGaaaaa > 2:549347/1‑76 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg < 1:196361/80‑1 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg > 2:196361/1‑80 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcct < 1:859209/112‑1 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg > 1:700452/1‑127 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg < 2:700452/127‑1 (MQ=255) aaCAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAAACCGTGAGGAATACGGGTTAcct > 2:859209/1‑112 (MQ=255) cAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGc > 2:799764/1‑139 (MQ=255) gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg > 2:1137567/1‑133 (MQ=255) gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg < 1:1137567/133‑1 (MQ=255) gCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGAtc > 1:880137/1‑139 (MQ=255) tATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATAc < 2:35893/93‑1 (MQ=255) tATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATAc > 1:35893/1‑93 (MQ=255) ggACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 2:436859/126‑1 (MQ=255) ggACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGAAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 1:436859/1‑126 (MQ=255) gACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCg > 2:596407/1‑124 (MQ=255) gACATCCCCGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCg < 1:596407/124‑1 (MQ=255) ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg > 1:895195/1‑56 (MQ=255) ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAg < 2:895195/56‑1 (MQ=255) ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg > 2:534361/1‑116 (MQ=255) ccccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATg < 1:534361/116‑1 (MQ=255) ccccGCACCACTGAAACGCCGTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGATTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCaagc > 2:842080/1‑137 (MQ=255) cccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGtt < 2:967207/93‑1 (MQ=255) cccGCACCACTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGtt > 1:967207/1‑93 (MQ=255) caccacTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTgag > 2:983213/1‑68 (MQ=255) caccacTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTgag < 1:983213/68‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt > 2:28513/1‑74 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGtt < 1:28513/74‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc < 2:182725/79‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTAcctc > 1:182725/1‑79 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg > 1:1355944/1‑93 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACg < 2:1355944/93‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 2:571097/1‑110 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 1:571097/110‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCa < 1:1060056/115‑1 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCa > 2:1060056/1‑115 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTg > 2:660369/1‑139 (MQ=255) cTGAAACGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTg > 1:1417977/1‑139 (MQ=255) aaCGGCTTCTTCCCGACCAAAAACGGATTGAAAAAAAAATCGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGTAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGAtct < 1:956777/139‑1 (MQ=255) cGCCTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCg > 2:1131213/1‑139 (MQ=255) ccTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGcc > 1:284795/1‑128 (MQ=255) ccTTCTTCCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGcc < 2:284795/128‑1 (MQ=255) tcttcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa > 1:385049/1‑80 (MQ=255) tcttcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCa < 2:385049/80‑1 (MQ=255) tcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa > 1:257042/1‑96 (MQ=255) tcCTGACCATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGa < 2:257042/96‑1 (MQ=255) | TCGCCCAACATGCGGTGCTTTGCAGCCAGCTGGTGCCGCAGGAATTTGCTTTTGAAGCATTAATGCATGATGCAACAGAAGCGTATTGCCAGGACATCCCCGCACCACTGAAACGCCTTCTTCCTGACTATAAACGGATGGAAGAAAAAATAGATGCAGTAATCCGTGAGAAATACGGGTTACCTCCTGTTATGAGCACGCCAGTGAAATATGCCGATCTCATTATGCTGGCAACCGAACGCCGTGATCTCG > NC_000913/2475123‑2475374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |