Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,769,404 Δ1 bp pseudogene (60/327 nt) yibV → pseudogene, putative cryptic Rhs immunity protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,769,4010A.100.0% 487.0 / NA 114pseudogene (57/327 nt)yibVpseudogene, putative cryptic Rhs immunity protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (57/57);  total (57/57)

Only 100 of 119 total aligned reads displayed.

GGCAAGGTTATTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGAAAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTGG  >  NC_000913/3769264‑3769535
                                                                                                                                         |                                                                                                                                      
ggCAAGGTTATTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaa                                                                                                                                       >  1:516052/1‑139 (MQ=255)
ggCAAGGTTATTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaa                                                                                                                                       >  1:34236/1‑139 (MQ=255)
ggCAAGGTTATTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaa                                                                                                                                       >  2:1432854/1‑139 (MQ=255)
            aaCAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACt                                                                                                                          <  1:1411977/139‑1 (MQ=255)
                aTTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      >  2:125541/1‑139 (MQ=255)
                aTTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGAC‑AAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                >  1:803168/1‑128 (MQ=255)
                aTTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGAC‑AAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                <  2:803168/128‑1 (MQ=255)
                 ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCt                                                                                                                     >  2:370076/1‑139 (MQ=255)
                 ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCt                                                                                                                     >  2:395381/1‑139 (MQ=255)
                 ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCt                                                                                                                     >  1:1460763/1‑139 (MQ=255)
                 ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCt                                                                                                                     >  1:622470/1‑139 (MQ=255)
                                 aTTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTACTTTGCCTGTAAGGc                                                                                                     <  2:1460763/139‑1 (MQ=255)
                                        cGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCagag                                                                                              >  2:1533699/1‑139 (MQ=255)
                                          aGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGc                                                                                            >  2:1261532/1‑139 (MQ=255)
                                            tGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           >  1:144493/1‑122 (MQ=255)
                                            tGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           <  2:144493/122‑1 (MQ=255)
                                            tGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTg                                                                                          >  2:1377697/1‑139 (MQ=255)
                                                    cTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 >  2:297537/1‑124 (MQ=255)
                                                    cTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 <  1:297537/124‑1 (MQ=255)
                                                    cTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  1:125541/139‑1 (MQ=255)
                                                    cTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  1:395381/139‑1 (MQ=255)
                                                    cTGCAAGAAAATTTCAGCGAGAGTTTGATTTGGCAGACAAAGCAACATTATGGGCACTAACATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:1157957/139‑1 (MQ=255)
                                                     tGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGAc                                                                                 <  2:516052/139‑1 (MQ=255)
                                                     tGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGAc                                                                                 <  1:513166/139‑1 (MQ=255)
                                                       cAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTg                                                                               <  1:370076/139‑1 (MQ=255)
                                                                 tCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATgg                                                                     <  2:58778/139‑1 (MQ=255)
                                                                          gTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGc                                                                                                     <  2:329078/98‑1 (MQ=255)
                                                                          gTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGc                                                                                                     >  1:329078/1‑98 (MQ=255)
                                                                                tttGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACa                                                      <  1:1377697/139‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaaagc                                                                                                                                    >  1:1213666/1‑57 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                <  1:579186/62‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                >  2:579186/1‑62 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            >  2:709782/1‑66 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            >  1:25142/1‑66 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            <  2:25142/66‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            <  1:709782/66‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      <  1:611536/72‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      >  2:611536/1‑72 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACt                                                                                      <  1:1320259/104‑1 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACt                                                                                      >  2:1320259/1‑104 (MQ=255)
                                                                                   ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAgg                                                   >  1:219120/1‑139 (MQ=255)
                                                                                     cAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGaa                                                 <  2:219120/139‑1 (MQ=255)
                                                                                        aCAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATgg                                                                     <  1:755621/116‑1 (MQ=255)
                                                                                        aCAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATgg                                                                     >  2:755621/1‑116 (MQ=255)
                                                                                        aCAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAAttt                                              >  1:450740/1‑139 (MQ=255)
                                                                                            aGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:1314107/99‑1 (MQ=255)
                                                                                                 tattatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:1261532/139‑1 (MQ=255)
                                                                                                 tattatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:987398/139‑1 (MQ=255)
                                                                                                 tattatGGACACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  2:191962/139‑1 (MQ=255)
                                                                                                  attatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGc                                                                             <  2:780802/98‑1 (MQ=255)
                                                                                                   ttatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:784227/137‑1 (MQ=255)
                                                                                                    tatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTa                                  >  2:165801/1‑139 (MQ=255)
                                                                                                     atGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTAt                                 <  1:904658/139‑1 (MQ=255)
                                                                                                      tGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTtct                                            <  2:291750/127‑1 (MQ=255)
                                                                                                      tGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTtct                                            >  1:291750/1‑127 (MQ=255)
                                                                                                       gggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:595638/1‑88 (MQ=255)
                                                                                                       gggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:595638/88‑1 (MQ=255)
                                                                                                       gggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTtctc                                           >  1:106188/1‑127 (MQ=255)
                                                                                                        ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           >  2:808749/1‑62 (MQ=255)
                                                                                                        ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           <  1:808749/62‑1 (MQ=255)
                                                                                                        ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:896567/132‑1 (MQ=255)
                                                                                                        ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     >  2:896567/1‑132 (MQ=255)
                                                                                                           aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATgg                                                                     <  1:1401586/97‑1 (MQ=255)
                                                                                                           aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATgg                                                                     >  2:1401586/1‑97 (MQ=255)
                                                                                                           aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATc                                >  1:1365761/1‑134 (MQ=255)
                                                                                                           aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTa                              <  1:1076307/136‑1 (MQ=255)
                                                                                                           aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTa                              >  2:1076307/1‑136 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 >  2:871298/1‑67 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 <  1:871298/67‑1 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTg                                                                  <  1:151388/98‑1 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:1240848/127‑1 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     >  2:1240848/1‑127 (MQ=255)
                                                                                                             tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAAtata                         >  2:216378/1‑139 (MQ=255)
                                                                                                                tatCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      <  2:1341976/139‑1 (MQ=255)
                                                                                                                  tCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAg                    <  1:427926/139‑1 (MQ=255)
                                                                                                                   cAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGc                                                                             >  2:459033/1‑81 (MQ=255)
                                                                                                                    aGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          >  2:899955/1‑115 (MQ=255)
                                                                                                                    aGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATc                                >  1:508149/1‑125 (MQ=255)
                                                                                                                    aGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATc                                <  2:508149/125‑1 (MQ=255)
                                                                                                                     gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTa                 >  1:341226/1‑139 (MQ=255)
                                                                                                                     gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTa                 >  1:42816/1‑139 (MQ=255)
                                                                                                                         gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACaaa             >  1:1223786/1‑139 (MQ=255)
                                                                                                                         gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACaaa             >  1:1068647/1‑139 (MQ=255)
                                                                                                                          tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      <  2:271059/129‑1 (MQ=255)
                                                                                                                          tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACaaaa            >  2:1165962/1‑139 (MQ=255)
                                                                                                                           aCTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAAt           <  2:622470/139‑1 (MQ=255)
                                                                                                                               aaGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAgg                                                                                             >  2:11348/1‑53 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTGACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTgg  >  2:1024836/1‑139 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAAc                                                                                       >  1:686941/1‑54 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAAc                                                                                       <  2:686941/54‑1 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:476698/59‑1 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:476698/1‑59 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTg                                                                               >  1:225910/1‑62 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGaa                                                              <  2:345773/79‑1 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAAt                                                <  1:1021846/93‑1 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAAt                                                >  2:1021846/1‑93 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTtctaa                                          >  2:1114887/1‑97 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          <  1:1114887/99‑1 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTAt                                 >  2:1011198/1‑108 (MQ=255)
                                                                                                                                    ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTAt                                 <  1:1011198/108‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GGCAAGGTTATTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGAAAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTGG  >  NC_000913/3769264‑3769535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑