Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,907,395 IS1 (+) +9 bp coding (33‑41/210 nt) cspC ← stress protein, member of the CspA‑family

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)45 (0.750) 35/206 0.5 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 1907403 0 (0.000)coding (33/210 nt) cspC stress protein, member of the CspA‑family
* ? NC_000913 = 1050545NA (NA)78 (1.350) 46/200 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 1907395 = 0 (0.000)coding (41/210 nt) cspC stress protein, member of the CspA‑family

GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258539‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGTTCGAAATTCAGGA  <  NC_000913/1907403‑1907269
                                                                                                                                                                                                                                                                                
GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCA                                                                                                                                       >  1:1099765/1‑139
      CGGCGGTGCTTTTGCCGTTATGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAC                                                                                                                                     <  1:1187556/135‑1
      CGGCGGTGCTTTTGCCGTTATGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAACTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAC                                                                                                                                     >  2:1187556/1‑135
        GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCT                                                                                                                               >  1:115988/1‑139
              CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGT                                                                                                                         >  1:1083267/1‑139
                   GCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGG                                                                                                                    <  2:17969/139‑1
                                            GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAC                                                                                                                                     >  1:1417596/1‑97
                                            GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAAC                                                                                                                                     <  2:1417596/97‑1
                                                 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGA                                                                                      >  2:286048/1‑139
                                                  CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTTAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGAT                                                                                     <  2:1099765/139‑1
                                                       GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTT                                                                                >  1:419389/1‑139
                                                          ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGG                                                                                                                    <  1:886722/100‑1
                                                          ACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCACCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGG                                                                                                                    >  2:886722/1‑100
                                                                   AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTC                                                                    <  2:115988/139‑1
                                                                     AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCG                                                                  <  1:286048/139‑1
                                                                     AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCG                                                                  <  1:1193988/139‑1
                                                                     AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCG                                                                  <  2:1083267/139‑1
                                                                             GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGG                                                                                                                    <  2:639299/81‑1
                                                                             GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGG                                                                                                                    >  1:639299/1‑81
                                                                                ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGT                                                       >  2:933215/1‑139
                                                                                         CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCT                                                                >  1:656784/1‑121
                                                                                         CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCT                                                                <  2:656784/121‑1
                                                                                            CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTA                                                                            >  1:1266352/1‑106
                                                                                            CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTA                                                                            <  2:1266352/106‑1
                                                                                              AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCC                                                            <  2:262926/120‑1
                                                                                              AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCC                                                            >  1:262926/1‑120
                                                                                                    CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTA                                                                            <  2:515569/98‑1
                                                                                                    CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTA                                                                            >  1:515569/1‑98
                                                                                                             ACTAAATCATTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTT                                                                       <  1:1430920/94‑1
                                                                                                             ACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCA                          <  1:878031/139‑1
                                                                                                             ACTAAATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTT                                                                       >  2:1430920/1‑94
                                                                                                                 AATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAAC                      >  2:1044223/1‑139
                                                                                                                 AATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGA                        >  1:534687/1‑137
                                                                                                                 AATCAGTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGA                        <  2:534687/137‑1
                                                                                                                      GTAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGA                 >  2:341381/1‑139
                                                                                                                       TAAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAG                >  1:37334/1‑139
                                                                                                                        AAGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGT               >  1:549962/1‑139
                                                                                                                         AGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGTT              >  2:570678/1‑139
                                                                                                                         AGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGC                                                                                                                   >  2:188314/1‑38
                                                                                                                         AGTTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGC                                                                                                                   <  1:188314/38‑1
                                                                                                                           TTGGCAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGTTCG            >  2:453365/1‑139
                                                                                                                               CAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGG                                                                                               <  2:610763/52‑1
                                                                                                                               CAGCATCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGG                                                                                               >  1:610763/1‑52
                                                                                                                                    TCACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGTTCGAAATTCAGG   <  2:16648/139‑1
                                                                                                                                     CACCCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAAGGTTGAGTTCGAAATTCCGGA  <  1:1044223/139‑1
                                                                                                                                                                                                                                                                                
GATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258539‑258675
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGCTGATGGCAGCAAAGATGTGTTCGTACACTTCTCCGCTATCCAGGGTAATGGCTTCAAAACTCTGGCTGAAGGTCAGAACGTTGAGTTCGAAATTCAGGA  <  NC_000913/1907403‑1907269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.