Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,286,984 G→A intergenic (+458/+82) narI → / ← rttR nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,286,9840GA100.0% 293.9 / NA 111intergenic (+458/+82)narI/rttRnitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (53/58);  total (53/58)

Only 100 of 111 total aligned reads displayed.

TGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTC  >  NC_000913/1286849‑1287110
                                                                                                                                       |                                                                                                                              
tGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg                                                                                                                             >  1:666129/1‑139 (MQ=255)
tGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg                                                                                                                             >  2:1507450/1‑139 (MQ=255)
 gCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa                                                                                                                            <  2:666129/139‑1 (MQ=255)
  cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa                                                                                                                           <  2:547161/139‑1 (MQ=255)
                aaTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTc                                                                                                             <  1:1507450/139‑1 (MQ=255)
                       gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                      <  1:371186/139‑1 (MQ=255)
                       gggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                      >  2:371186/1‑139 (MQ=255)
                            tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGTGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      >  2:4440/1‑118 (MQ=255)
                            tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGTGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      <  1:4440/118‑1 (MQ=11)
                            tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  1:800498/1‑139 (MQ=16)
                            tttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  2:628769/1‑139 (MQ=37)
                            taaggaaGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  2:1260787/134‑1 (MQ=11)
                             ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa                                                                                                                            >  2:664228/1‑111 (MQ=255)
                             ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa                                                                                                                            <  1:664228/111‑1 (MQ=255)
                              tGAAAGTGATGGTGGTGGGGGAAGGTTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                               <  2:381835/139‑1 (MQ=12)
                                    cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      <  2:189827/109‑1 (MQ=255)
                                    cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      >  1:189827/2‑110 (MQ=255)
                                     gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTg                                                                                        >  1:1196551/1‑139 (MQ=12)
                                             tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  2:1218224/1‑122 (MQ=12)
                                             tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  1:1218224/122‑1 (MQ=12)
                                             tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGa                                                                                <  1:903711/139‑1 (MQ=255)
                                             tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAt                                                                               >  1:653835/1‑139 (MQ=255)
                                               ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAGGCTTCTCATCCTTCCCCGc                                                                                                        >  1:500495/1‑113 (MQ=255)
                                               ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAGGCTTCTCATCCTTCCCCGc                                                                                                        <  2:500495/113‑1 (MQ=255)
                                                   aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  <  2:1316275/99‑1 (MQ=255)
                                                   aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  <  2:1411962/99‑1 (MQ=255)
                                                   aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  >  1:1411962/1‑99 (MQ=255)
                                                   aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  >  1:1316275/1‑99 (MQ=255)
                                                   aaGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCt                                                                          >  1:1369578/1‑139 (MQ=255)
                                                    aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCt                                                                                                                        <  1:893071/92‑1 (MQ=255)
                                                    aGGACTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCt                                                                                                                        >  2:893071/1‑92 (MQ=255)
                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTga                                                                       <  1:1340623/139‑1 (MQ=255)
                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCgttggg                                                                       <  1:424455/139‑6 (MQ=0)
                                                         tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGa                                                                                                                            >  1:1292603/1‑83 (MQ=255)
                                                         tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGa                                                                                                                            <  2:1292603/83‑1 (MQ=255)
                                                         tACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGTAGCTTCTCATcc                                                                                                                >  1:718622/1‑95 (MQ=11)
                                                           cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGtt                                                                  >  2:133206/1‑139 (MQ=255)
                                                            tCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTc                                                                 <  2:1369578/139‑1 (MQ=255)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCa                                                                                                                   >  1:1367067/1‑85 (MQ=255)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCa                                                                                                                   <  2:1367067/85‑1 (MQ=255)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   >  2:1127064/1‑101 (MQ=12)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   <  1:1127064/101‑1 (MQ=9)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAACCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  >  1:49377/1‑86 (MQ=11)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAACCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  <  2:49377/86‑1 (MQ=11)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCa                                                                                                                   >  1:766019/1‑85 (MQ=255)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCa                                                                                                                   <  2:766019/85‑1 (MQ=255)
                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   <  2:29268/101‑1 (MQ=255)
                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  >  2:659418/1‑81 (MQ=255)
                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCAt                                                                                                                  <  1:659418/81‑1 (MQ=255)
                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGc                                                                                                        >  2:664176/1‑91 (MQ=255)
                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGc                                                                                                        <  1:664176/91‑1 (MQ=255)
                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  2:723542/98‑1 (MQ=255)
                                                                         cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGaa                                                    <  2:1521742/139‑1 (MQ=255)
                                                                                  tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATc                                                                                                                 >  1:877735/1‑69 (MQ=11)
                                                                                  tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTGAATCGAAGCTTCTCATc                                                                                                                 <  2:877735/69‑1 (MQ=11)
                                                                                  tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGc                                                                                                        >  2:1321773/1‑78 (MQ=255)
                                                                                    gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtggt                                        <  2:653835/139‑1 (MQ=11)
                                                                                     ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtggt                                        <  2:361997/139‑1 (MQ=11)
                                                                                      gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      >  1:811871/1‑60 (MQ=255)
                                                                                      gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTtc                                                                                                                      <  2:811871/60‑1 (MQ=255)
                                                                                       tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGc                                                                                                        >  1:1418128/1‑73 (MQ=255)
                                                                                       tCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGc                                                                                                        <  2:1418128/73‑1 (MQ=255)
                                                                                           tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAtt                                                                              >  2:642850/1‑95 (MQ=255)
                                                                                           tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAtt                                                                              <  1:642850/95‑1 (MQ=255)
                                                                                                gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                           <  1:1227970/45‑1 (MQ=14)
                                                                                                gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                           >  2:1227970/1‑45 (MQ=11)
                                                                                                gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCtt                                                                                                                       <  1:615089/49‑1 (MQ=14)
                                                                                                gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCtt                                                                                                                       >  2:615089/1‑49 (MQ=11)
                                                                                                gCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  2:1107031/1‑71 (MQ=255)
                                                                                                gCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  1:1107031/71‑1 (MQ=255)
                                                                                                      aCGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  2:795352/65‑1 (MQ=11)
                                                                                                      aCGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  1:795352/1‑65 (MQ=11)
                                                                                                       cGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  1:365037/1‑64 (MQ=11)
                                                                                                       cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 >  1:500815/1‑64 (MQ=255)
                                                                                                       cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  2:500815/64‑1 (MQ=255)
                                                                                                           ctctcGCTGGCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttcgaaccttcg                  >  2:1134431/1‑129 (MQ=11)
                                                                                                              tcGCTGGCGCTCGAGCCGAACCTTAATCGAAGCtt                                                                                                                       >  1:892279/1‑35 (MQ=14)
                                                                                                                 cTGGCGCTCGAGCCGAACCTTAATCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTc                                                                 >  2:911543/1‑86 (MQ=17)
                                                                                                                   ggcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   >  1:1120828/3‑50 (MQ=14)
                                                                                                                   ggcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   <  2:1120828/48‑1 (MQ=14)
                                                                                                                   ggcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                   <  2:946387/112‑1 (MQ=11)
                                                                                                                   ggcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTggggg                                   >  1:946387/3‑114 (MQ=11)
                                                                                                                   gACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTccc                                                                                                           <  1:1280605/42‑1 (MQ=255)
                                                                                                                   gACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTccc                                                                                                           >  2:1280605/1‑42 (MQ=255)
                                                                                                                    gcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTccg                                                               <  1:1192322/84‑3 (MQ=14)
                                                                                                                    gcGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTccg                                                               >  2:1192322/2‑83 (MQ=14)
                                                                                                                    aCGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc         <  1:658205/139‑1 (MQ=11)
                                                                                                                      gCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                              <  2:168475/84‑1 (MQ=255)
                                                                                                                      gCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAgg                                                              >  1:168475/1‑84 (MQ=255)
                                                                                                                      gCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtgg                                         >  2:356995/1‑105 (MQ=11)
                                                                                                                      gCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAtggtgg                                         <  1:356995/105‑1 (MQ=14)
                                                                                                                      gCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc       <  2:7041/139‑1 (MQ=11)
                                                                                                                        tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   <  1:827662/45‑1 (MQ=255)
                                                                                                                        tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   >  2:827662/1‑45 (MQ=255)
                                                                                                                        tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                          >  1:21229/1‑102 (MQ=255)
                                                                                                                        tCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGAtggtg                                          <  2:21229/102‑1 (MQ=255)
                                                                                                                           aGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   <  1:499263/42‑1 (MQ=255)
                                                                                                                           aGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                   >  2:499263/1‑42 (MQ=255)
                                                                                                                           aGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTGGAGAATTCAGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCACAGCGCGCGTCGCCCTTc  >  2:329538/1‑139 (MQ=11)
                                                                                                                                aaCCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                 <  2:511239/39‑1 (MQ=14)
                                                                                                                                       |                                                                                                                              
TGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTC  >  NC_000913/1286849‑1287110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: