| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,549,055 | C→T | S83L (TCG→TTG) | fimH → | minor component of type 1 fimbriae |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,549,055 | 0 | C | T | 100.0% | 171.8 / NA | 53 | S83L (TCG→TTG) | fimH | minor component of type 1 fimbriae |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (28/25); total (28/25) | |||||||||||
ATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGC > NC_000913/4548926‑4549189 | aTGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATgg > 2:197802/1‑139 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATggcg > 2:1326436/1‑129 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATggcg < 1:1326436/129‑1 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTGAtt > 1:988985/1‑139 (MQ=255) gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:197802/139‑1 (MQ=255) tgtgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa > 2:64080/1‑139 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 1:797107/139‑1 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATggcg > 1:689230/1‑95 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATggcg < 2:689230/95‑1 (MQ=255) tCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAg < 1:64080/139‑1 (MQ=255) gATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATc > 1:389393/1‑139 (MQ=255) cTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTTCAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATTCAt < 2:988985/139‑1 (MQ=255) tttGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGa < 2:721587/139‑1 (MQ=255) ccATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCgg > 1:1493519/1‑87 (MQ=255) ccATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCgg < 2:1493519/87‑1 (MQ=255) gATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg < 2:758508/139‑1 (MQ=255) ttACAGACTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCgag > 2:218919/1‑139 (MQ=255) cTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa < 2:1417009/64‑1 (MQ=255) cTATGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa > 1:1417009/1‑64 (MQ=255) aTGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:785572/57‑1 (MQ=255) aTGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:785572/1‑57 (MQ=255) tGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat < 1:1461273/65‑1 (MQ=255) tGTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat > 2:1461273/1‑65 (MQ=255) gTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGc > 2:405165/1‑139 (MQ=255) gTCACACTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGc > 2:1232036/1‑139 (MQ=255) cacaCTGCAACGAGGCTTGGCTTATTGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgc < 1:818046/109‑1 (MQ=255) cacaCTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgc > 2:818046/1‑109 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAg < 2:305012/63‑1 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAg > 1:305012/1‑63 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAg > 1:1327405/1‑63 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAg < 2:1327405/63‑1 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCAt > 2:336473/1‑80 (MQ=255) acTGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCAt < 1:336473/80‑1 (MQ=255) tGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg > 1:1072720/1‑105 (MQ=255) tGCAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg < 2:1072720/105‑1 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:1379973/46‑1 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:650257/46‑1 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:1379973/1‑46 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:650257/1‑46 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCt < 2:737468/81‑1 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCt > 1:737468/1‑81 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg < 2:264849/103‑1 (MQ=255) cAACGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg > 1:264849/1‑103 (MQ=255) aCGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc > 1:698250/1‑61 (MQ=255) aCGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 2:698250/61‑1 (MQ=255) aCGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCa > 2:1069032/1‑62 (MQ=255) aCGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCa < 1:1069032/62‑1 (MQ=255) aCGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTg > 2:272259/1‑139 (MQ=255) cGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg < 2:396085/100‑1 (MQ=255) cGAGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCcgcgcg > 1:396085/1‑100 (MQ=255) aGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:1346200/41‑1 (MQ=255) aGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 2:1346200/1‑41 (MQ=255) aGGCTTGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGgcg > 1:522446/1‑139 (MQ=255) ggcttggcttATGGCGGCGTGTTATCTAATTTTTCCgg > 1:1110510/1‑38 (MQ=255) ggcttggcttATGGCGGCGTGTTATCTAATTTTTCCgg < 2:1110510/38‑1 (MQ=255) ggcttggcttATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGgcgc < 2:522446/139‑1 (MQ=255) | ATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGC > NC_000913/4548926‑4549189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |