| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,291,973 | T→C | G146G (GGA→GGG) | ccmH ← | heme lyase, CcmH subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,291,973 | 0 | T | C | 100.0% | 265.2 / NA | 73 | G146G (GGA→GGG) | ccmH | heme lyase, CcmH subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/36); total (37/36) | |||||||||||
CGCCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATATCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACG > NC_000913/2291838‑2292108 | cgcCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCg > 1:993077/1‑139 (MQ=255) gcCCTGTCCAGCAAGGCAGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATTATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCgg < 2:993042/139‑1 (MQ=255) cccTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGc > 2:43321/1‑139 (MQ=255) cccTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGc < 1:650960/139‑1 (MQ=255) tCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCt > 2:835344/1‑139 (MQ=255) ccGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCgg > 2:798381/1‑139 (MQ=255) gAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑c > 1:1047613/1‑139 (MQ=255) ccTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCt < 2:1616046/139‑1 (MQ=255) ggCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGTTAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGa < 1:224203/139‑1 (MQ=255) tgctgcCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc > 1:417074/1‑120 (MQ=255) tgctgcCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc < 2:417074/120‑1 (MQ=255) ttttCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac < 1:43321/139‑1 (MQ=255) ttttCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac < 1:798381/139‑1 (MQ=255) ttttCACCTGCCGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGcac < 2:1047613/139‑1 (MQ=255) aCCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCtt < 1:1531183/100‑1 (MQ=255) aCCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCtt > 2:1531183/1‑100 (MQ=255) ccTGCTGATAACTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCAcgcg < 2:1051446/139‑1 (MQ=255) ctgATAATTGTCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAcc > 1:88738/1‑139 (MQ=255) ctgATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAcc > 2:882540/1‑139 (MQ=255) tgATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAccc < 2:993077/139‑1 (MQ=255) tgATAATTCCCTGTCTGCTAGTCGCTGACACCAGCCACAGTTGACGTCACCACAGTACCCGGCAGAAAAACAAGATACACGGCACGCTTACCTGCCGGCA‑‑TGCTTTGATCAGGAAACGCTTCCCGCCCCGCGGGTAccc > 1:833123/1‑139 (MQ=255) tAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGAc > 2:1279459/1‑139 (MQ=255) ccAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCcgcg > 1:710741/1‑139 (MQ=255) ccAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCcgcg > 1:294648/1‑139 (MQ=255) aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 2:88738/139‑1 (MQ=255) aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 1:1404607/139‑1 (MQ=255) aGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 1:882540/139‑1 (MQ=255) tCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCg > 1:183986/1‑139 (MQ=255) cTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTAcc > 2:710565/1‑78 (MQ=255) cTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTAcc < 1:710565/78‑1 (MQ=255) tGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCggg < 2:183986/139‑1 (MQ=255) tGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCggg < 2:294648/139‑1 (MQ=255) gtagtaGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCg > 1:1411795/1‑139 (MQ=255) agtagCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGta < 1:1506876/139‑1 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCACGCGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGtata > 1:1105956/1‑139 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGt > 2:376115/1‑112 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGt < 1:376115/112‑1 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg > 1:1244228/1‑127 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 2:1244228/127‑1 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 1:897298/127‑1 (MQ=255) gCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg > 2:897298/1‑127 (MQ=255) tGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAc > 1:153175/1‑139 (MQ=255) tGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAc > 1:663784/1‑139 (MQ=255) aCGCCAGCCACAATTGACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGAccc > 2:1521104/1‑139 (MQ=255) cGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAc > 1:421613/1‑109 (MQ=255) cGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTAc < 2:421613/109‑1 (MQ=255) cagccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca < 2:1422297/96‑1 (MQ=255) cagccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca > 1:1422297/1‑96 (MQ=255) ccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCgcc < 1:1595980/139‑1 (MQ=255) ccaCAATTAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCgcc > 2:42434/1‑139 (MQ=255) tAACGCCACCACAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCCACGCCGCGAGCGGGCGTATATGACCCAACCgccaatgcca < 2:980961/139‑1 (MQ=255) accacAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAAc < 2:1497503/69‑1 (MQ=255) accacAATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAAc > 1:1497503/1‑69 (MQ=255) cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc < 2:880593/49‑1 (MQ=255) cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGc > 1:880593/1‑49 (MQ=255) cacaATACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCact > 2:1379965/1‑139 (MQ=255) aTACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTg < 2:651463/139‑1 (MQ=255) tACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCgg > 2:1145265/1‑98 (MQ=255) tACCCGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCgg < 1:1145265/98‑1 (MQ=255) cccGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg > 1:521209/1‑93 (MQ=255) cccGGCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAg < 2:521209/93‑1 (MQ=255) ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca < 2:267181/67‑1 (MQ=255) ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGca > 1:267181/1‑67 (MQ=255) ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCactact < 1:1163046/132‑1 (MQ=255) ggCAGATAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCactact > 2:1163046/1‑132 (MQ=255) aaaaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcac > 1:966896/3‑139 (MQ=255) aTAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcac > 2:285584/1‑139 (MQ=255) tAAACAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCcaca < 2:966896/139‑1 (MQ=255) aaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTg < 2:615579/40‑1 (MQ=39) aaaCAACATACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTg > 1:615579/1‑40 (MQ=255) acaacaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCAcagca > 2:636610/1‑139 (MQ=255) acaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAgcagca < 2:663784/139‑1 (MQ=255) acaTACCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAgcagca < 2:153175/139‑1 (MQ=255) atacCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACg < 1:835344/139‑1 (MQ=255) | CGCCCTGTCCAGCAACGCCGGAGCCTGTGCCGTGGCCTGCTGCCAGATTTTCACCTGCTGATAATTGCCAGTCTGGTAGTAGCTGACGCCAGCCACAATTAACGCCACCACAATACCCGGCAGATAAACAACATATCCGGCACGCTTACCTTCCGGCA‑‑CGCTTTGTTCAGGAAACGCTTCCGGCACCACGCGTACCCGACGCCGCGAGCGGGCGTATATGACCCAACCGCCAATGCCAATAGCCACTACTGGCAGCACCCACAGCAGCACG > NC_000913/2291838‑2292108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |