Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,428,079 C→T pseudogene (386/402 nt)
*213* (TAG→TAA) 		 ytfA →
ytfB ←		 pseudogene, related to transcriptional regulators
OapA family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,428,0790CT100.0% 290.5 / NA 88pseudogene (386/402 nt)
*213* (TAG→TAA) 		ytfA
ytfB		pseudogene, related to transcriptional regulators
OapA family protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (43/45);  total (43/45)

GCGGATATTATTTGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATCTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGATTTTCACCATCTGCCCGTTTT  >  NC_000913/4427944‑4428209
                                                                                                                                       |                                                                                                                                  
gCGGATATTATTTGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTAc                                                                                                                                 <  2:1423274/139‑1 (MQ=255)
     tattatTTGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCgcgc                                                                                                                            <  1:278825/139‑1 (MQ=255)
      attattTGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCa                                                                                                                           >  1:780763/1‑139 (MQ=255)
          tttGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGaa                                                                                                                       >  1:146634/1‑139 (MQ=255)
              aTCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATaaa                                                                                                                   >  2:957617/1‑139 (MQ=255)
                 aaCCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACt                                                                                                                <  1:1552892/139‑1 (MQ=255)
                 aaCCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACt                                                                                                                >  2:1552892/1‑139 (MQ=255)
                  aCCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTg                                                                                                               >  2:1460312/1‑139 (MQ=255)
                  aCCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTg                                                                                                               >  2:155730/1‑139 (MQ=255)
                   ccAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGc                                                                                                              >  1:144496/1‑139 (MQ=255)
                                ggCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             >  2:331565/1‑111 (MQ=255)
                                ggCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             <  1:331565/111‑1 (MQ=255)
                                      gTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCt                                                                                                     <  2:904176/129‑1 (MQ=255)
                                      gTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCt                                                                                                     >  1:904176/1‑129 (MQ=255)
                                      gTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGaa                                                                                           >  1:1281748/1‑139 (MQ=255)
                                      gTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGaa                                                                                           <  1:1460312/139‑1 (MQ=255)
                                      gTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGaa                                                                                           <  1:957617/139‑1 (MQ=255)
                                       tttATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAAc                                                                                          <  1:1059892/139‑1 (MQ=255)
                                           tCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGa                                                                                      <  1:705231/139‑1 (MQ=255)
                                            cacaTCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     <  2:144496/139‑1 (MQ=255)
                                                      tGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGatta                                                                           >  1:322725/1‑139 (MQ=255)
                                                        gTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGattatt                                                                         <  2:1224657/139‑1 (MQ=255)
                                                             aCCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCgcgc                                                                                                                            >  1:100640/1‑83 (MQ=255)
                                                             aCCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCgcgc                                                                                                                            <  2:100640/83‑1 (MQ=255)
                                                             aCCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCg                                                                    >  1:1280567/1‑139 (MQ=255)
                                                              ccccAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       >  1:206310/1‑119 (MQ=255)
                                                              ccccAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       <  2:206310/119‑1 (MQ=255)
                                                              ccccAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGt                                                                   >  2:1402009/1‑139 (MQ=255)
                                                                ccAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTAt                                                                 <  2:146634/139‑1 (MQ=255)
                                                                  aGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCa                                                               <  1:1089260/139‑1 (MQ=255)
                                                                  aGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCa                                                               <  1:1402009/139‑1 (MQ=255)
                                                                   ggCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     >  2:1242388/1‑116 (MQ=255)
                                                                   ggCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     <  1:1242388/116‑1 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             <  1:1262797/70‑1 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             >  2:1262797/1‑70 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACTGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTa                                                        <  1:949884/139‑1 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     <  1:278554/110‑1 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     >  2:278554/1‑110 (MQ=255)
                                                                         ggAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTa                                                        >  1:624473/1‑139 (MQ=255)
                                                                         ggAACCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTa                                                        <  2:1062642/139‑1 (MQ=255)
                                                                                aGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGt                                                 >  1:1000551/1‑139 (MQ=255)
                                                                                     tAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTcacca                                            <  1:1060951/139‑1 (MQ=255)
                                                                                            atcaAATAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             <  1:1143596/51‑1 (MQ=255)
                                                                                            atcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             >  2:1143596/1‑51 (MQ=255)
                                                                                            atcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       >  2:268176/1‑89 (MQ=255)
                                                                                            atcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       <  1:268176/89‑1 (MQ=255)
                                                                                            atcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCt                                     >  2:439300/1‑139 (MQ=255)
                                                                                             tcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTg                                    >  1:1106768/1‑139 (MQ=255)
                                                                                             tcaAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTg                                    <  2:1000551/139‑1 (MQ=255)
                                                                                              caAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTg                                                                                                    <  2:697715/74‑1 (MQ=255)
                                                                                              caAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTg                                                                                                    >  1:697715/1‑74 (MQ=255)
                                                                                              caAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTcacca                                            >  2:440891/1‑130 (MQ=255)
                                                                                              caAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTcacca                                            <  1:440891/130‑1 (MQ=255)
                                                                                                      cAATCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTgg                           <  2:571327/139‑1 (MQ=255)
                                                                                                       aaTCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGc                          >  2:716408/1‑139 (MQ=255)
                                                                                                        aTCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             <  2:557008/39‑1 (MQ=255)
                                                                                                        aTCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACcgcg                                                                                                                             >  1:557008/1‑39 (MQ=255)
                                                                                                        aTCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGGGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCg                         >  1:1099190/1‑139 (MQ=255)
                                                                                                        aTCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCg                         <  2:624473/139‑1 (MQ=255)
                                                                                                         tCCTTAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCgg                        >  1:783875/1‑139 (MQ=255)
                                                                                                             tAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCa                                                                                                            >  2:572427/1‑51 (MQ=255)
                                                                                                             tAGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCa                                                                                                            <  1:572427/51‑1 (MQ=255)
                                                                                                              aGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAAc                                                                                          >  1:867257/1‑68 (MQ=255)
                                                                                                              aGCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGAtttt                   <  2:783875/139‑1 (MQ=255)
                                                                                                              aGCAGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAAc                                                                                          <  2:867257/68‑1 (MQ=255)
                                                                                                               gCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGc                          >  2:489970/1‑131 (MQ=255)
                                                                                                               gCTGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGc                          <  1:489970/131‑1 (MQ=255)
                                                                                                                 tGGCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGATTTTCAc                <  2:1280567/139‑1 (MQ=255)
                                                                                                                   gCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       >  2:989320/1‑66 (MQ=255)
                                                                                                                   gCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       <  1:989320/66‑1 (MQ=255)
                                                                                                                   gCTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGATTTTCACCa              >  2:109918/1‑139 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTgg                                                                                                   <  2:160699/53‑1 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTgg                                                                                                   >  1:160699/1‑53 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       <  1:82146/65‑1 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAgg                                                                                       >  2:82146/1‑65 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     <  2:997438/67‑1 (MQ=255)
                                                                                                                    cTTTTGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGAc                                                                                     >  1:997438/1‑67 (MQ=255)
                                                                                                                     ttttGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCt                                                                                   >  2:176605/1‑68 (MQ=255)
                                                                                                                     ttttGGTTGACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCt                                                                                   <  1:176605/68‑1 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCggg                                                                                               >  2:632819/1‑48 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCggg                                                                                               <  1:632819/48‑1 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGa                                                                                      <  2:1538288/57‑1 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGa                                                                                      >  1:1538288/1‑57 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTAt                                                                 >  2:1129289/1‑78 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTAt                                                                 <  1:1129289/78‑1 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGtt                                                         <  2:277101/86‑1 (MQ=255)
                                                                                                                             gACCCTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGtt                                                         >  1:277101/1‑86 (MQ=255)
                                                                                                                               cccTTCATTTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGATTTTCACCATCTGCCCGtttt  <  2:1206387/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                  
GCGGATATTATTTGATCAACCAGCATACGCTTGGCCTGGTTTATCACATCAGTATGGTTTCACCCCAGGCACTGGAAGCCAGACGTAAGGTCATCAAAGAGACAATCCTTAGCTGGCTTTTGGTTGACCCTTCATCTACCGCGCACGAATAAAACTGCCATCCGGCTGGCGGGTGAACAGGACCTGTTGATTATTCCCCGTATCAATGGTTAAGCCCGTCACCACGCCGCTGGCGTTCTGGCGGATTTTCACCATCTGCCCGTTTT  >  NC_000913/4427944‑4428209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑