| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,980,957 | (G)6→8 | coding (71/1386 nt) | yifK → | putative APC family amino acid transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,980,951 | 1 | . | G | 100.0% | 149.9 / NA | 42 | L22R (CTG→CGG) | yifK | putative APC family amino acid transporter |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (23/19); total (23/19) | |||||||||||
| * | NC_000913 | 3,980,951 | 2 | . | G | 100.0% | 149.1 / NA | 42 | L22R (CTG→CGG) | yifK | putative APC family amino acid transporter |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (23/19); total (23/19) | |||||||||||
CTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGA > NC_000913/3980824‑3981080 || cTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑ggggggggcac > 1:833654/1‑134 (MQ=255) aCCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCg > 1:728639/1‑139 (MQ=255) aCCCATAACGATAACCGGTAACACAGGAAAGCATGCAAACACAACACGAGGATTTATGGCACCTACCAAACCAGCGCTGCAGTTTGGGCTGGAAGCTCGACCTATCGCACTCACCGCCAT‑‑‑GGGGGGGACACCATGGGCg > 2:850299/1‑139 (MQ=255) tAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGc > 1:390801/1‑139 (MQ=255) tAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGc > 2:763567/1‑139 (MQ=255) aaCGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGcc > 1:88147/1‑139 (MQ=255) aCGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCt > 2:583808/1‑139 (MQ=255) aCCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTAt > 2:1047807/1‑139 (MQ=255) aaCACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGgc < 2:728639/139‑1 (MQ=255) aaCACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGgc > 1:797235/1‑139 (MQ=255) cGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:1047807/139‑1 (MQ=255) aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAcc < 2:833654/139‑1 (MQ=255) aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAcc < 2:217982/139‑1 (MQ=255) cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt > 2:1064524/1‑139 (MQ=255) aTGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTg > 2:144916/1‑139 (MQ=255) cAAACACAACACGAGGATTTATGGCAGATAACAAACCCGAGCTACAGCGTGGGCTGGAAGCTCTACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCGTGaaa < 2:916250/139‑1 (MQ=255) caacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑ggg < 1:791433/82‑1 (MQ=255) caacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑ggg > 2:791433/1‑82 (MQ=255) cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaa < 1:942364/129‑1 (MQ=255) cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaa > 2:423315/1‑129 (MQ=255) cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaa > 2:942364/1‑129 (MQ=255) cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaa < 1:423315/129‑1 (MQ=255) acGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggc < 2:88147/139‑1 (MQ=255) aTGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:107743/1‑106 (MQ=255) aTGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGgccgc < 2:107743/106‑1 (MQ=255) tGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg < 1:1064524/139‑1 (MQ=255) tGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg < 1:144916/139‑1 (MQ=255) cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgttg < 2:797235/139‑1 (MQ=255) gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGc > 1:650400/1‑139 (MQ=255) gagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:22733/90‑1 (MQ=255) gagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa > 2:22733/1‑90 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGcc > 1:892144/1‑139 (MQ=255) gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCg < 2:390801/139‑1 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGcc < 1:530207/61‑1 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGcc > 2:530207/1‑61 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCg > 1:501230/1‑139 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑gggggggg > 2:298330/1‑40 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑gggggggg < 1:298330/42‑3 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTtcat < 1:763567/139‑1 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTtcat < 1:583808/139‑1 (MQ=255) cGACATATCGAACTCATCGCCCTGGGGGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAGTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTtcatca > 1:1029743/1‑139 (MQ=255) cGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc < 2:532201/88‑1 (MQ=255) cGACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc > 1:532201/1‑88 (MQ=255) gACATATCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATg < 1:211363/139‑1 (MQ=255) atCGAACTCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTc > 1:465220/1‑139 (MQ=255) tCATCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGc > 1:247136/1‑139 (MQ=255) aTCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGa > 2:1033205/1‑139 (MQ=255) aTCGCCCTGG‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGa > 1:767690/1‑139 (MQ=255) || CTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑‑GGGGGG‑‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGA > NC_000913/3980824‑3981080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |