| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,862,524 | Δ3 bp | pseudogene (1078‑1080/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3862524 | 3862526 | 3 | 41 [0] | [0] 41 | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3862523 | 0 (0.000) | 41 (0.880) | 32/216 | 0.3 | 100% | pseudogene (1081/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component |
| ? | NC_000913 | 3862527 = | 0 (0.000) | pseudogene (1077/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component | |||||
GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NC_000913/3862391‑3862650 | gtgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac > 2:182383‑M2/137‑139 (MQ=255)gtgcggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcac < 2:501447‑M2/3‑1 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcactcagacctccgccatgttcaccac > 1:601154‑M2/134‑139 (MQ=255) cggaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccac > 1:850095‑M2/134‑139 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggctccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 2:730796‑M2/8‑1 (MQ=255) gaaaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 2:191070‑M2/8‑1 (MQ=255) aaaccacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 1:421165‑M2/10‑1 (MQ=255) aaaccacgaagtacagcagggtaaaacacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacacca < 2:741487‑M2/10‑1 (MQ=255) accacgaagtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCaaa > 1:1072182‑M2/128‑139 (MQ=255) gtacagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACa < 1:182383‑M2/20‑1 (MQ=255) cagcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTa < 2:257179‑M2/23‑1 (MQ=255) agcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTAc < 1:814165‑M2/24‑1 (MQ=255) gcagggtaaagcacaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACg < 2:610597‑M2/25‑1 (MQ=255) acaacccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAg < 1:272268‑M2/37‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTa < 1:52779‑M2/23‑1 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTa > 2:52779‑M2/99‑121 (MQ=255) cccaatggcgatttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGgccg < 2:850095‑M2/41‑1 (MQ=255) atttgggtcagcatcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCTCACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 2:669092‑M2/89‑139 (MQ=255) catcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTc < 2:998405‑M2/28‑1 (MQ=255) catcatatccgcgtggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTc > 1:998405‑M2/78‑105 (MQ=255) ggttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGaa < 2:328794‑M2/76‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac < 2:876515‑M2/8‑1 (MQ=255) gttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttcaccacac > 1:876515‑M2/63‑70 (MQ=255) ttgctgaacatcgggatccagttttgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAAt > 1:200945‑M2/62‑139 (MQ=255) tgcggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCgg < 2:834184‑M2/102‑1 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg < 1:735489‑M2/99‑1 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAg > 2:735489‑M2/36‑134 (MQ=255) cggtaaaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGtt > 2:214211‑M2/36‑139 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc < 2:929807‑M2/51‑1 (MQ=255) aaacttagtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:929807‑M2/31‑81 (MQ=255) agtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGaa > 1:134743‑M2/25‑105 (MQ=255) agtcaatcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGaa < 2:134743‑M2/81‑1 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc > 1:309469‑M2/19‑69 (MQ=255) tcagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGc < 2:309469‑M2/51‑1 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCa < 1:214211‑M2/122‑1 (MQ=255) cagacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCa < 2:200945‑M2/122‑1 (MQ=255) gacctccgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATg < 2:913654‑M2/124‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATg < 1:951011‑M2/79‑1 (MQ=255) cgccatgttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATg > 2:951011‑M2/10‑88 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGt < 1:276829‑M2/73‑1 (MQ=255) ttCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGt > 2:276829‑M2/3‑75 (MQ=255) | GGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATG > NC_000913/3862391‑3862650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |