| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,595,527 | T→C | T109A (ACG→GCG) | lgoR ← | putative transcriptional activator for L‑galactonate catabolism |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,595,527 | 0 | T | C | 94.4% | 108.4 / ‑2.7 | 36 | T109A (ACG→GCG) | lgoR | putative transcriptional activator for L‑galactonate catabolism |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (18/16); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
CGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACG > NC_000913/4595395‑4595647 | cGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTcccc < 1:62814/139‑1 (MQ=255) cATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAAc < 2:897022/139‑1 (MQ=255) aTAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTcccc > 1:834485/1‑98 (MQ=255) aTAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTcccc < 2:834485/98‑1 (MQ=255) aTTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCa > 2:76380/1‑139 (MQ=255) tataACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaaa > 2:397550/1‑139 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAATGCCTGCTCcaa < 2:622896/137‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaaa > 1:622896/1‑137 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTccc > 1:582900/1‑88 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTccc < 2:582900/88‑1 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAaca > 2:671670/1‑139 (MQ=255) taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAaca > 1:144577/1‑139 (MQ=255) cGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACt > 1:1006141/1‑97 (MQ=255) cGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACt < 2:1006141/97‑1 (MQ=255) agcagatagctcgTACTACAACTGGCCCCACACCCGCGGCCCAAGCCAGCTGCAGTTCAGAAAACTCTTTCCCGCGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTATGTTTTGTTCACt < 2:267261/130‑1 (MQ=255) atTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGa < 1:364809/139‑1 (MQ=255) actacAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtag > 2:869675/1‑139 (MQ=255) actacAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtag > 1:106335/1‑139 (MQ=255) aCCGGGCTGACACCCGCGGCCCGCGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGATTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTAAAGCgactgtcactt > 1:267261/1‑129 (MQ=255) cGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCg < 1:397550/139‑1 (MQ=255) cGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCg > 2:202901/1‑139 (MQ=255) gggCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGa < 1:76380/139‑1 (MQ=255) ggCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTcccc < 2:962148/49‑1 (MQ=255) ggCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTcccc > 1:962148/1‑49 (MQ=255) ggCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGa > 2:372262/1‑121 (MQ=255) ggCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGa < 1:372262/121‑1 (MQ=255) gCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc > 2:300679/1‑88 (MQ=255) gCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:300679/88‑1 (MQ=255) acacCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGt > 2:491842/1‑139 (MQ=255) cccGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGgc < 2:326563/55‑1 (MQ=255) cccGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGgc > 1:326563/1‑55 (MQ=255) ccGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGtcatc < 2:106335/139‑1 (MQ=255) gcgGCCCGAGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTcatcat > 1:262975/1‑139 (MQ=255) aGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaa > 1:800012/1‑77 (MQ=255) aGCCAGTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaa < 2:800012/77‑1 (MQ=255) gTTGCAGTTCAGAAAACGCTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTAcg < 2:262975/139‑1 (MQ=255) | CGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACG > NC_000913/4595395‑4595647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |