| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,159,054 | Δ1 bp | coding (565/918 nt) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,159,051 | 0 | G | . | 100.0% | 291.1 / NA | 68 | coding (562/918 nt) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (35/33); total (35/33) | |||||||||||
GCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGG > NC_000913/4158944‑4159183 | gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCAc > 1:1268772/1‑139 (MQ=255) cGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACt > 2:115961/1‑139 (MQ=255) ttGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 1:1217390/139‑1 (MQ=255) tGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCCATc > 2:1277469/1‑139 (MQ=255) aaGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATg < 2:298554/109‑1 (MQ=255) aaGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATg > 1:298554/1‑109 (MQ=255) tGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCa < 2:845705/139‑1 (MQ=255) tGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCa < 1:612758/139‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGa < 1:1043291/102‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGa > 2:1043291/1‑102 (MQ=255) cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgctg > 1:1253108/1‑100 (MQ=255) cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgctg < 2:1253108/100‑1 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTc > 1:146711/1‑102 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTc < 2:146711/102‑1 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGa > 2:189222/1‑139 (MQ=255) cAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa < 1:1160142/122‑1 (MQ=255) cAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa > 2:1160142/1‑122 (MQ=255) cAATGTTGCTGGCTATCTATG‑AGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgct < 2:634619/83‑1 (MQ=255) cAATGTTGCTGGCTATCTATG‑AGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgct > 1:634619/1‑83 (MQ=255) cTGGCTAGCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTATCTGTTTTGAAGCCGGGGc > 2:880680/1‑139 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATg < 1:269515/139‑1 (MQ=255) aaGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca > 2:401017/1‑139 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACt > 2:952439/1‑139 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGG‑‑GATCTGGCA‑GGGAAAACCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGt < 2:1119106/100‑1 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGG‑‑GATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGt > 1:1119106/1‑100 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg > 1:1254317/1‑66 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg < 2:1254317/66‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgct > 2:863705/1‑57 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgct < 1:863705/57‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGttt > 1:224232/1‑81 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGttt < 2:224232/81‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 1:390528/88‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt > 2:390528/1‑88 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGa < 2:1299576/123‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGa > 1:1299576/1‑123 (MQ=255) tGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg < 2:18112/60‑1 (MQ=255) tGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg > 1:18112/1‑60 (MQ=255) gggCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcgcgcg > 2:607760/1‑139 (MQ=255) gCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAc < 2:1268772/139‑1 (MQ=255) cGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:718299/1‑110 (MQ=255) cGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:718299/110‑1 (MQ=255) cGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAcc < 1:607760/139‑1 (MQ=255) cGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAcc < 2:156318/139‑1 (MQ=255) aaCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg > 2:39785/1‑139 (MQ=255) aaCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg < 1:39785/139‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:1253451/1‑107 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:1253451/107‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGc > 1:338331/1‑139 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGc > 2:123136/1‑139 (MQ=255) tGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAAc < 1:880680/139‑1 (MQ=255) tACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:792019/1‑95 (MQ=255) tACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:468660/95‑1 (MQ=255) tACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:468660/1‑95 (MQ=255) tACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:792019/95‑1 (MQ=255) ccGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 1:115961/139‑1 (MQ=255) ccGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 1:401017/139‑1 (MQ=255) aTGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGt > 2:1237232/1‑44 (MQ=255) aTGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGt < 1:1237232/44‑1 (MQ=38) tGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa < 2:1009112/138‑1 (MQ=255) tGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa > 1:1009112/1‑138 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGa < 2:1206052/95‑1 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGa > 1:1206052/1‑95 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca > 2:708057/1‑102 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca < 1:708057/102‑1 (MQ=255) gCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAt > 1:753895/1‑139 (MQ=255) tCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:695406/82‑1 (MQ=255) tCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:695406/1‑82 (MQ=255) tCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtgg > 2:937513/1‑139 (MQ=255) | GCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGG > NC_000913/4158944‑4159183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |