Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,420,793 (G)6→7 coding (110/423 nt) ydaT → Rac prophage, uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,420,7871.G100.0% 166.9 / NA 46Q35R (CAG→CGG) ydaTRac prophage, uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (23/23);  total (23/23)

ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAG  >  NC_000913/1420656‑1420899
                                                                                                                                    |                                                                                                                
aCCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggggg                                                                                                           >  2:684295/1‑138 (MQ=255)
  cTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑gggggggcg                                                                                                         >  1:1254835/1‑136 (MQ=255)
          tCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTg                                                                                                  >  1:1342844/1‑139 (MQ=255)
           cAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGc                                                                                                 >  2:888833/1‑139 (MQ=255)
            aaGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcc                                                                                                >  2:19936/1‑139 (MQ=255)
              gagGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc                                                                                              <  1:888833/139‑1 (MQ=255)
                    aaTGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTc                                                                                        <  1:684295/139‑1 (MQ=255)
                                        cATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt                                                                    <  1:19936/139‑1 (MQ=255)
                                               acaTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa                                                             <  2:1111833/139‑1 (MQ=255)
                                                 aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa                                                                                  >  1:1193447/1‑116 (MQ=255)
                                                 aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCa                                                                                  <  2:1193447/116‑1 (MQ=255)
                                                 aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAat                                                           >  1:976244/1‑139 (MQ=255)
                                                             ttgttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt                                               <  2:976244/139‑1 (MQ=255)
                                                               gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt                                               >  1:778833/1‑137 (MQ=255)
                                                               gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTAGTTCCAGGCAAGGACGGGAACAATCAGCAGAATATCTATCACCgt                                               <  2:778833/137‑1 (MQ=255)
                                                                tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgtt                                              >  1:877110/1‑137 (MQ=255)
                                                                tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgtt                                              <  2:877110/137‑1 (MQ=255)
                                                                    cccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGa                                        <  1:532885/139‑1 (MQ=255)
                                                                     ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCTAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag                                                                 <  2:585281/113‑1 (MQ=255)
                                                                     ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcag                                                                 >  1:585281/1‑113 (MQ=255)
                                                                     ccTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGaa                                       >  1:728538/1‑139 (MQ=255)
                                                                              cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa                                                                              <  2:444835/91‑1 (MQ=255)
                                                                              cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGa                                                                              >  1:444835/1‑91 (MQ=255)
                                                                                       gcaggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCa                     >  1:2379/1‑139 (MQ=255)
                                                                                          ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc                                                                                   >  2:31696/1‑74 (MQ=255)
                                                                                          ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGc                                                                                   <  1:31696/74‑1 (MQ=255)
                                                                                          ggcaTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAag                  <  1:1055710/139‑1 (MQ=255)
                                                                                                ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt                                               >  1:29257/1‑104 (MQ=255)
                                                                                                ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt                                               <  2:29257/104‑1 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc                                                                                              >  2:731845/1‑48 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc                                                                                              <  1:731845/48‑1 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc                                                                                              >  1:469906/1‑48 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGcccc                                                                                              <  2:469906/48‑1 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt                                                                    <  2:609879/74‑1 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt                                                                    >  1:609879/1‑74 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa                           <  2:1142888/115‑1 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa                           >  1:1142888/1‑115 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGaa   >  1:894185/1‑139 (MQ=255)
                                                                                                         tGCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGaa   >  2:88234/1‑139 (MQ=255)
                                                                                                          gCAATTACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAg  <  2:728538/139‑1 (MQ=255)
                                                                                                              ttACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggttg                                         >  2:1024799/1‑96 (MQ=255)
                                                                                                              ttACTGAAGAATATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggttg                                         <  1:1024799/96‑1 (MQ=255)
                                                                                                                    aagaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCaa                    <  2:273089/111‑1 (MQ=255)
                                                                                                                    aagaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCaa                    >  1:273089/1‑111 (MQ=255)
                                                                                                                      gaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGa                                                                         >  2:179340/1‑56 (MQ=255)
                                                                                                                      gaaTATCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGa                                                                         <  1:179340/56‑1 (MQ=255)
                                                                                                                          atCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa                                                             >  1:637603/1‑64 (MQ=255)
                                                                                                                          atCTGCGCCAGGGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGa                                                             <  2:637603/64‑1 (MQ=255)
                                                                                                                                    |                                                                                                                
ACCTGAAACATCAAGAGGCAAATGATTCATGAAAATCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGGGCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACGCAAAGAGAAAAAATTCAGAAG  >  NC_000913/1420656‑1420899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑