| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,471,767 | (C)5→6 | pseudogene (356/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage,Phage or Prophage Related |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,471,762 | 1 | . | C | 100.0% | 176.2 / NA | 50 | pseudogene (361/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (26/24); total (26/24) | |||||||||||
ACCGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑CCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCA > NC_000913/2471625‑2471895 | aCCGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑c < 1:663386/139‑1 (MQ=255) ccGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc < 1:1051834/139‑1 (MQ=255) aGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑ccccccattg < 1:504577/139‑6 (MQ=255) cAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca < 1:1097098/125‑3 (MQ=255) cAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca > 2:1097098/1‑123 (MQ=255) tGCACTGCCGGGACTGTAATCCTCAGTCGCAAATACCCGCAGACATCTATTCGGCAATGCAATCGGAAAATAGGTTACTATGTCTTGAGACGTCAGCGGTACATCAATTGGCCCCCCATTGAATAATTAAACCGGATgg < 2:887503/139‑1 (MQ=255) cACTGCCGGGAGTGTAATACTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGAAGGCa > 1:887503/1‑139 (MQ=255) ggAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccc < 1:1021200/105‑1 (MQ=255) ggAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccc > 2:1021200/1‑105 (MQ=255) aaTCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc > 1:215244/1‑96 (MQ=255) aaTCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc < 2:215244/96‑1 (MQ=255) ccTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa < 2:1173619/139‑1 (MQ=255) aGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGa > 1:630356/1‑139 (MQ=255) cAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGc‑cccccca > 1:949912/1‑87 (MQ=255) cAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAAcc > 1:1313729/1‑104 (MQ=255) cAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAAcc < 2:1313729/104‑1 (MQ=255) cAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGCTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca < 2:949912/89‑3 (MQ=255) ccGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca < 1:107378/82‑3 (MQ=255) ccGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca > 2:107378/1‑80 (MQ=255) aGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAgg < 2:1122584/117‑1 (MQ=255) aGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAgg > 1:1122584/1‑117 (MQ=255) aTCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGa > 1:389171/1‑125 (MQ=255) aTCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGa < 2:389171/125‑1 (MQ=255) ttCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCata > 1:1195773/1‑139 (MQ=255) cGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATc < 2:1195773/139‑1 (MQ=255) ggAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGa < 1:1183405/117‑1 (MQ=255) ggAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGa > 2:1183405/1‑117 (MQ=255) aaaTGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAgg > 1:937232/1‑139 (MQ=255) tCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGAt < 1:143890/139‑1 (MQ=255) tgtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa > 2:59259/1‑79 (MQ=255) tgtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa < 1:59259/79‑1 (MQ=255) gtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGaataa > 1:770912/1‑45 (MQ=255) gtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGaataa < 2:770912/45‑1 (MQ=255) ccTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTc > 1:2460/1‑139 (MQ=255) tGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTAt > 2:577866/1‑111 (MQ=255) tGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTAt < 1:577866/111‑1 (MQ=255) agaCGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTa < 2:208316/95‑1 (MQ=255) agaCGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTa > 1:208316/1‑95 (MQ=255) agaCGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCtttt > 1:1127541/1‑139 (MQ=255) cGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGc < 2:359655/76‑1 (MQ=255) cGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGc > 1:359655/1‑76 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATg < 2:113537/46‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATg > 1:113537/1‑46 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATcc > 2:960904/1‑62 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATcc < 1:960904/62‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGat < 2:839722/67‑2 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa > 1:839722/1‑67 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa < 2:1119300/67‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGaa > 1:1119300/1‑67 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCa < 2:951560/82‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCa > 1:951560/1‑82 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATc < 2:1078705/98‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATc > 1:1078705/1‑98 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGccc < 1:1030370/115‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGccc > 2:472821/1‑115 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGccc > 2:1030370/1‑115 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGccc < 1:472821/115‑1 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCg > 1:1340479/1‑139 (MQ=255) tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCg > 2:973476/1‑139 (MQ=255) gCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCtt < 2:937232/139‑1 (MQ=255) aTCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTcc > 2:681188/1‑111 (MQ=255) aTCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTcc < 1:681188/111‑1 (MQ=255) aTTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCa < 2:1127541/139‑1 (MQ=255) | ACCGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑CCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGCTTCTCCCAAACCA > NC_000913/2471625‑2471895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |