| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,498,047 | (G)6→7 | intergenic (+107/‑225) | intB → / → insC1 | pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,498,041 | 1 | . | G | 100.0% | 197.2 / NA | 55 | intergenic (+101/‑231) | intB/insC1 | pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (28/27); total (28/27) | |||||||||||
ATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑GGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGT > NC_000913/4497909‑4498174 | atGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggggg < 1:82156/139‑1 (MQ=255) gCAAAGAATAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑ggggggga < 1:1236240/139‑3 (MQ=255) cAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggggggat > 2:574486/1‑136 (MQ=255) aataatCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGaa > 1:148365/1‑139 (MQ=255) taatCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATc < 2:148365/139‑1 (MQ=255) atCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTTCAGGGGGGGATTATCAGAATCcg < 2:519210/139‑1 (MQ=255) cATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggg > 1:312951/1‑119 (MQ=255) cATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gggg < 2:312951/119‑1 (MQ=255) cAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat < 2:859235/139‑1 (MQ=255) atcCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTtata > 2:875226/1‑139 (MQ=255) cccGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTtatata > 1:1221616/1‑139 (MQ=255) cGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACa < 1:1039919/139‑1 (MQ=255) cGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACa > 2:693302/1‑139 (MQ=255) aaTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAAt > 1:728277/1‑139 (MQ=255) tGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑ggggggga < 1:777657/95‑3 (MQ=255) tGCCCGGGAATTATTCTAGGATTATTTTCCTTGTTAAAAAAGACAGACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑ggggggga > 2:777657/1‑93 (MQ=255) gggAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat > 2:466329/1‑114 (MQ=255) gggAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat < 1:466329/114‑1 (MQ=255) gggAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAg > 2:180245/1‑139 (MQ=255) ggATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gg > 2:1086024/1‑71 (MQ=255) ggATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑gg < 1:1086024/71‑1 (MQ=255) ttattTTCTTTCTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAAt < 1:875226/139‑1 (MQ=255) ttttCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTAtt > 2:847803/1‑92 (MQ=255) ttttCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTAtt < 1:847803/92‑1 (MQ=255) gTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATaa < 1:693302/139‑1 (MQ=255) gTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATaa < 2:728277/139‑1 (MQ=255) ttAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAggg < 2:142768/123‑1 (MQ=255) ttAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAggg > 1:142768/1‑123 (MQ=255) tGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTa < 1:1341866/139‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGa < 1:356629/43‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGa > 2:356629/1‑43 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCcg < 2:1263898/48‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCcg > 1:1263898/1‑48 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat < 1:1112314/59‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat > 2:1112314/1‑59 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATc < 2:550673/101‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATc > 1:550673/1‑101 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGt < 1:479887/105‑1 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGt > 2:479887/1‑105 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAgg > 1:311810/1‑139 (MQ=255) tGTATTTACTATTTACCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAgg > 1:1257403/1‑139 (MQ=255) tttactatttacCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCattatt > 1:433820/1‑59 (MQ=255) tttactatttacCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCattatt < 2:433820/59‑1 (MQ=255) ttacCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAggg > 1:1086340/1‑139 (MQ=255) acCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCgg > 2:18332/1‑37 (MQ=255) acCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCgg < 1:18332/37‑1 (MQ=255) acCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAAc > 2:796894/1‑74 (MQ=255) acCGCTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAAc < 1:796894/74‑1 (MQ=255) cTCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGa > 1:105125/1‑139 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTc > 1:497366/1‑38 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTc < 2:497366/38‑1 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat < 2:901843/40‑1 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCat > 1:901843/1‑40 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACa > 2:206180/1‑52 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACa < 1:206180/52‑1 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATa < 2:787187/59‑1 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATa > 1:787187/1‑59 (MQ=255) tCCCTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGAt > 2:801288/1‑139 (MQ=255) cccTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATg < 2:105125/139‑1 (MQ=255) ccTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCattatt > 1:891057/1‑42 (MQ=255) ccTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCattatt < 2:891057/42‑1 (MQ=255) ccTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATaaa > 2:400194/1‑75 (MQ=255) ccTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATaaa < 1:400194/75‑1 (MQ=255) cTGCAGGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGt < 1:180245/139‑1 (MQ=255) | ATGCAAAGATTAATAATCCATTAAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCA‑GGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGT > NC_000913/4497909‑4498174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |