New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 237583140 (0.740)4 (0.070) 3/204 5.1 8.2% coding (132/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?NC_000913 2375836 = 50 (0.930)coding (127/963 nt) menC O‑succinylbenzoyl‑CoA synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCT  >  NC_000913/2375698‑2375956
                                                                                                                                          |                                                                                                                        
aGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTcccc                                                                                                                          >  2:209678/1‑139 (MQ=255)
 gCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTccccc                                                                                                                         >  1:617575/1‑139 (MQ=255)
 gCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTccccc                                                                                                                         <  2:146557/139‑1 (MQ=255)
              gCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                            <  1:515008/139‑1 (MQ=255)
                        gCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                  <  1:973431/139‑1 (MQ=255)
                              gCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCa                                                                                            <  2:165465/139‑1 (MQ=255)
                               cGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCaa                                                                                           >  2:215585/1‑139 (MQ=255)
                               cGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCaa                                                                                           >  1:1280514/1‑139 (MQ=255)
                                            tCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGt                                                                              >  1:1051164/1‑139 (MQ=255)
                                                                tACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTg                                                          <  1:215585/139‑1 (MQ=255)
                                                                      ggCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCgcgc                                                    <  1:209678/139‑1 (MQ=255)
                                                                       gCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCa                                                   >  1:883471/1‑139 (MQ=255)
                                                                        cAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAT‑‑‑‑CCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAacc                                              >  1:1179987/1‑139 (MQ=255)
                                                                                 cacTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCAcccc                                         >  2:926177/1‑139 (MQ=255)
                                                                                   cTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcg                                       <  1:585105/139‑1 (MQ=255)
                                                                                     ttGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                     <  1:1046607/139‑1 (MQ=255)
                                                                                     ttGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                     <  1:926177/139‑1 (MQ=255)
                                                                                     ttGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                     >  2:503233/1‑139 (MQ=255)
                                                                                      tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcgc                                    >  1:1191673/1‑138 (MQ=255)
                                                                                        cgcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCGCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTcc                                  <  2:883471/139‑1 (MQ=255)
                                                                                         gcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                     <  1:221696/135‑1 (MQ=255)
                                                                                         gcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgcg                                     >  2:221696/1‑135 (MQ=255)
                                                                                         gcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCa                                 >  2:146800/1‑139 (MQ=255)
                                                                                            tctTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCa                                                                                            >  1:1067584/1‑77 (MQ=255)
                                                                                            tctTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCa                                                                                            <  2:1067584/77‑1 (MQ=255)
                                                                                                cccAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGAt                          <  1:268301/139‑1 (MQ=255)
                                                                                                 ccAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGAT‑‑‑‑CCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGcc                     <  2:1179987/139‑1 (MQ=255)
                                                                                                      tttCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                   <  2:746823/139‑1 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGCTCTCCCCCCACCCTTCGCGCt                                                                                                            >  1:1150531/1‑49 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCt                                                                                                            <  2:1150531/49‑1 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                  >  2:587852/1‑59 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                  <  1:587852/59‑1 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCAccccc                                        >  2:44121/1‑117 (MQ=255)
                                                                                                        tCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCAccccc                                        <  1:44121/117‑1 (MQ=255)
                                                                                                         ccTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCa                                                                                                <  1:980061/60‑1 (MQ=255)
                                                                                                         ccTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCa                                                                                                >  2:980061/1‑60 (MQ=255)
                                                                                                          ctgactgaAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcgc                                                                           >  1:206196/1‑80 (MQ=255)
                                                                                                          ctgactgaAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTcgc                                                                           <  2:206196/80‑1 (MQ=255)
                                                                                                                    cccGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCt         <  2:393339/136‑1 (MQ=255)
                                                                                                                    cccGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCt         >  1:393339/1‑136 (MQ=255)
                                                                                                                      cGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcg    <  1:503233/139‑1 (MQ=255)
                                                                                                                        gCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCt  <  2:1051164/139‑1 (MQ=255)
                                                                                                                                      tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATa                                                                                      >  2:267559/1‑41 (MQ=255)
                                                                                                                                      tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATa                                                                                      <  1:267559/41‑1 (MQ=255)
                                                                                                                                      tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgc                                      <  2:447002/89‑1 (MQ=255)
                                                                                                                                      tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCcgc                                      >  1:447002/1‑89 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                   <  2:623825/106‑1 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                   <  2:842560/106‑1 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                   >  1:623825/1‑106 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcgc   >  2:1038446/1‑122 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcgc   <  1:1038446/122‑1 (MQ=255)
                                                                                                                                        cccccACCCTTCGCGCTAGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAg                   >  1:842560/1‑106 (MQ=255)
                                                                                                                                          |                                                                                                                        
AGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCT  >  NC_000913/2375698‑2375956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.