| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,645,063 | G→A | intergenic (‑161/+56) | rem ← / ← hokD | Qin prophage, uncharacterized protein/Qin prophage, small toxic polypeptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,645,063 | 0 | G | A | 100.0% | 78.2 / NA | 26 | intergenic (‑161/+56) | rem/hokD | Qin prophage, uncharacterized protein/Qin prophage, small toxic polypeptide |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (14/12); total (14/12) | |||||||||||
CCCCTTTAAGGGACCATCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCGTTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGA > NC_000913/1644929‑1645189 | ccccTTTAGGGAACCTTCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGa < 1:503021/139‑1 (MQ=255) cccTTTAAGGGACCATCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAg > 1:1237152/1‑139 (MQ=255) cATCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCcaca > 1:296294/1‑139 (MQ=255) cATCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCcaca > 2:297195/1‑139 (MQ=255) ttATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCATCGTCCAGAACGTCAAACGCGTTGAAAATAAAAACAATAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtg < 2:191106/122‑1 (MQ=255) ttATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtg > 1:191106/1‑122 (MQ=255) gcgcTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGAt > 2:373335/1‑139 (MQ=255) gcgcTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGAt > 1:340741/1‑139 (MQ=255) tttGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtgcc < 2:31989/98‑1 (MQ=255) tttGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtgcc > 1:31989/1‑98 (MQ=255) ttGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGtc < 2:747344/139‑1 (MQ=255) aTTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtgcctgc < 1:1064705/97‑1 (MQ=255) aTTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtgcctgc > 2:1064705/1‑97 (MQ=255) ggccAGAACTGCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtg < 2:1157679/74‑1 (MQ=38) gTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGa > 2:208770/1‑74 (MQ=255) gTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGa < 1:208770/74‑1 (MQ=255) gTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGAtg > 1:1157679/1‑76 (MQ=255) gTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGt > 1:1007949/1‑139 (MQ=255) cgcgTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAg < 2:1007949/139‑1 (MQ=255) aacaaaaacCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACa > 1:511917/1‑123 (MQ=255) aacaaaaacCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACa < 2:511917/123‑1 (MQ=255) aaacCCGCCGAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGtt < 1:373335/139‑1 (MQ=255) gccgAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCg > 1:449757/1‑135 (MQ=255) gccgAAGCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCg < 2:449757/135‑1 (MQ=255) gCGGGTTAAGTGCGGGTGCATTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCGGATTCGTAcc > 2:246040/1‑139 (MQ=255) tAAGTGCGGGTGCATTGAGGATGCCTGCC‑CATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCaga < 2:1237152/139‑1 (MQ=255) | CCCCTTTAAGGGACCATCCCTCTTATCCCTGCGCGCTACTTAAGTATTTTTGATTCTATTCCGGCACCGTCCAGAACTTCAAACGCGTTGAAAATAAAAACAAAAACCCGCCGAAGCGGGTTAAGTGCGGGTGCGTTGAGGATGCCTGCCACATCAGAGGTGGCGAGGGATTTCTCCCCCGCCGGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGA > NC_000913/1644929‑1645189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |