Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,190,061 | (G)6→7 | coding (387/672 nt) | phoP ← | response regulator in two‑component regulatory system with PhoQ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,190,055 | 1 | . | G | 100.0% | 277.8 / NA | 77 | P131P (CCG→CCC) | phoP | response regulator in two‑component regulatory system with PhoQ |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (43/34); total (43/34) |
TTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA > NC_000913/1189925‑1190177 | ttAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑ggggggga > 2:1385578/1‑137 (MQ=255) ttAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑ggggggga < 2:519497/139‑3 (MQ=255) tCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg > 1:1061210/1‑139 (MQ=255) gCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg > 2:226911/1‑139 (MQ=255) cACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGc > 2:862353/1‑139 (MQ=255) tGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc > 2:485319/1‑139 (MQ=255) ttGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTa > 1:151695/1‑139 (MQ=255) aataGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCAt < 1:226911/139‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGAcc > 2:1486833/1‑93 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGAcc < 1:1486833/93‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa > 2:970796/1‑124 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa < 1:970796/124‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg > 2:507856/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg > 1:1348188/1‑139 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg < 1:485319/139‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTc < 1:1515423/136‑1 (MQ=255) tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTc > 2:1515423/1‑136 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg > 1:1795894/1‑93 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg < 2:1795894/93‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa < 2:649124/101‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa > 1:649124/1‑101 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc < 1:862353/139‑1 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 1:673072/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 2:870645/1‑139 (MQ=255) tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc > 1:312480/1‑139 (MQ=255) gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 1:954467/1‑139 (MQ=255) gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:312480/139‑1 (MQ=255) aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg > 2:1811414/1‑108 (MQ=255) aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg < 1:1811414/108‑1 (MQ=255) cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa < 1:680166/112‑1 (MQ=255) cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa > 2:680166/1‑112 (MQ=255) cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt < 2:1061210/139‑1 (MQ=255) cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑g < 2:887230/63‑1 (MQ=255) cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑g > 1:887230/1‑63 (MQ=255) gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTc > 1:1681624/1‑139 (MQ=255) gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa > 1:1289956/1‑110 (MQ=255) gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa < 2:1289956/110‑1 (MQ=255) aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg > 2:15596/1‑67 (MQ=255) aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg < 1:15596/67‑1 (MQ=255) aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAAc < 2:673072/139‑1 (MQ=255) cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAg > 2:897828/1‑77 (MQ=255) cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAg < 1:897828/77‑1 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa > 2:1468578/1‑65 (MQ=255) aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa < 1:1468578/65‑1 (MQ=255) aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt < 2:1520060/101‑1 (MQ=255) aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt > 1:1520060/1‑101 (MQ=255) aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat > 1:476839/1‑139 (MQ=255) aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat > 2:652493/1‑139 (MQ=255) ttCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGAGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGc > 2:1478762/1‑139 (MQ=255) tCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAg < 2:1282647/53‑1 (MQ=255) tCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAg > 1:1282647/1‑53 (MQ=255) cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc < 1:652493/139‑1 (MQ=255) cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc > 1:642634/1‑139 (MQ=255) cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc < 2:954467/139‑1 (MQ=255) ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGGATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCgg > 1:1694696/1‑139 (MQ=255) ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt < 1:154291/100‑1 (MQ=255) ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt > 2:154291/1‑100 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa < 2:1314734/51‑1 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa > 1:1314734/1‑51 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 1:1031923/94‑1 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 2:1031923/1‑94 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGGACCGGc < 1:1343468/139‑1 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGc > 1:645102/1‑139 (MQ=255) gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGc > 1:1475890/1‑139 (MQ=255) cGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATa < 2:1561216/123‑1 (MQ=255) cGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATa > 1:1561216/1‑123 (MQ=255) gagaTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTaa < 1:507856/139‑1 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt < 1:1214241/82‑1 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt > 2:1214241/1‑82 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt < 1:1703707/105‑1 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt > 2:1703707/1‑105 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTACATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTc > 1:691548/1‑110 (MQ=255) aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTACATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTc < 2:691548/110‑1 (MQ=255) aaCCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc > 1:1521630/1‑82 (MQ=255) aaCCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc < 2:1521630/82‑1 (MQ=255) ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc > 2:818532/1‑40 (MQ=255) ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc < 1:818532/40‑1 (MQ=255) ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt > 2:267090/1‑100 (MQ=255) ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt < 1:267090/100‑1 (MQ=255) tGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc < 2:1002430/38‑1 (MQ=255) tGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc > 1:1002430/1‑38 (MQ=255) | TTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA > NC_000913/1189925‑1190177 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |