| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,129,500 | Δ646 bp | IS5‑mediated | [yghO] | [yghO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3129500 | 3131263–3130143 | 644–1764 | 60 [1] | [17] 22 | [yghO]–insH1 | [yghO], insH1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3129499 | 1 (0.010) | 59 (0.810) | 36/208 | 0.7 | 98.3% | pseudogene (645/1101 nt) | yghO | pseudogene, IS‑interrupted |
| ? | NC_000913 | 3130146 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3129363‑3129499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGC > NC_000913/3130146‑3130261 TGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG < 1:592689/139‑1TGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG < 1:295514/139‑1 CAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGC < 1:596312/139‑1 CCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAAC < 2:278581/139‑1 GAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT > 2:127258/1‑139 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCCGGGAAGGTGCGAACAAG < 2:1146034/112‑1 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC > 2:1272595/1‑115 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC < 1:1272595/115‑1 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAG > 1:1146034/1‑112 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAG < 1:1745210/101‑1 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAG > 2:1745210/1‑101 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG < 2:465057/98‑1 ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAACTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG > 1:465057/1‑98 ATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC < 1:127258/139‑1 ATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT > 1:440311/1‑139 ATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA > 1:1471521/1‑128 ATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA < 2:1471521/128‑1 ATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC < 2:456988/95‑1 ATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC > 1:456988/1‑95 TCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT > 2:955838/1‑139 CCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA < 2:973190/123‑1 CCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA > 1:973190/1‑123 GGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG < 1:392128/116‑1 GGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG > 2:392128/1‑116 GATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG < 2:1631729/64‑1 GATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG > 1:1631729/1‑64 ATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC > 2:1715907/1‑119 ATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC < 1:1715907/119‑1 TTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGT > 1:1490354/1‑59 TTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGT < 2:1490354/59‑1 TGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT > 2:166480/1‑139 GATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGCAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACATGGTTCATCATGAGTCATCAACTTACCTTC > 2:1241304/1‑139 GATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > 2:956621/1‑139 GATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTC > 2:1604788/1‑139 GATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAAC < 1:240569/63‑1 GATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAAC > 2:240569/1‑63 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCC > 2:421386/1‑69 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCC < 1:421386/69‑1 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCC < 1:1697061/69‑1 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCC > 2:1697061/1‑69 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG < 1:1265825/51‑1 ATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGG > 2:1265825/1‑51 GCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC > 2:622352/1‑65 GCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCC < 1:622352/65‑1 ATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG > 2:1373431/1‑139 CGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAAT < 2:440311/139‑1 GCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATC < 1:1076692/68‑1 GCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATC > 2:1076692/1‑68 CGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG > 2:1470647/1‑82 CGAATTCATGTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGG < 1:1470647/82‑1 GTTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAG < 1:1373431/139‑1 TTCGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC < 1:1604788/139‑1 CGGTAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGC < 2:1505519/139‑1 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGC > 2:823403/1‑127 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGC < 1:823403/127‑1 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTC < 2:278735/95‑1 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTC > 1:278735/1‑95 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC < 1:432847/64‑1 TAAACGGCACAAATCCCCAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 2:432847/1‑64 TGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3129363‑3129499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGC > NC_000913/3130146‑3130261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |