Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,286,984 G→A intergenic (+458/+82) narI → / ← rttR nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,286,9840GA100.0% 273.4 / NA 98intergenic (+458/+82)narI/rttRnitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/51);  total (47/51)

CGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTT  >  NC_000913/1286851‑1287118
                                                                                                                                     |                                                                                                                                          
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       >  1:1000995/1‑139 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       >  1:807226/1‑139 (MQ=255)
     tcgcttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTtc                                                                                                                               <  2:807226/135‑1 (MQ=255)
         ttGAGAATTCCGGGGCTTTTGAAAGTGATCGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGTTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCAt                                                                                                                           <  2:899123/139‑1 (MQ=255)
                ttCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTccc                                                                                                                    <  1:61014/139‑1 (MQ=255)
                        cTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            <  1:1808280/139‑1 (MQ=16)
                            tGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          >  2:943167/1‑137 (MQ=18)
                            tGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          <  1:943167/137‑1 (MQ=16)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       >  2:827424/2‑105 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       <  1:827424/104‑1 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTtc                                                                                                                               >  1:589554/2‑110 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTtc                                                                                                                               <  2:589554/109‑1 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTc                                                                                                                      >  2:816037/2‑119 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTc                                                                                                                      <  1:816037/118‑1 (MQ=255)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            >  2:984564/2‑129 (MQ=16)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          >  1:1301299/2‑131 (MQ=12)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          <  2:1301299/130‑1 (MQ=16)
                                  cgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            <  1:984564/128‑1 (MQ=255)
                                   gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       >  1:423531/1‑104 (MQ=12)
                                   gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       <  2:423531/104‑1 (MQ=12)
                                           tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGa                                                                                                                                        >  2:1338966/1‑95 (MQ=16)
                                           tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGa                                                                                                                                        <  1:1338966/95‑1 (MQ=16)
                                            gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCa                                                                                                                <  2:1072657/115‑1 (MQ=16)
                                            gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCa                                                                                                                >  1:1072657/1‑115 (MQ=19)
                                            gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt                                                                                        <  2:341590/139‑1 (MQ=255)
                                             ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          >  1:1102443/1‑120 (MQ=16)
                                             ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          <  2:1102443/120‑1 (MQ=16)
                                             ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg                                                                                                                                         >  1:1747504/1‑92 (MQ=255)
                                             ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg                                                                                                                                         <  2:1747504/92‑1 (MQ=255)
                                                  aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa                                                                                                                                        <  1:40566/88‑1 (MQ=255)
                                                  aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa                                                                                                                                        >  2:40566/1‑88 (MQ=255)
                                                  aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCgttg                                                                                  >  1:659740/1‑136 (MQ=12)
                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 >  2:855108/1‑106 (MQ=12)
                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 <  1:855108/106‑1 (MQ=12)
                                                    gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTga                                                                                <  1:1751241/139‑1 (MQ=255)
                                                         cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCa                                                                                                                <  2:664501/102‑1 (MQ=12)
                                                         cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCa                                                                                                                >  1:664501/1‑102 (MQ=12)
                                                          tCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            >  2:1507303/1‑105 (MQ=255)
                                                          tCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            <  1:1507303/105‑1 (MQ=255)
                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTga                                                                                <  1:270977/129‑1 (MQ=255)
                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTga                                                                                >  2:270977/1‑129 (MQ=255)
                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          >  1:771355/1‑103 (MQ=255)
                                                              cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          <  2:771355/103‑1 (MQ=255)
                                                               gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCgggg                                                                    >  2:597347/1‑138 (MQ=255)
                                                               gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCAt                                                                                                                           <  1:571395/85‑1 (MQ=255)
                                                               gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCAt                                                                                                                           >  2:571395/1‑85 (MQ=255)
                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       <  1:509860/72‑1 (MQ=255)
                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGaa                                                                                                                                       >  2:509860/1‑72 (MQ=255)
                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTtc                                                                                                                               <  1:745306/77‑1 (MQ=11)
                                                                   cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTtc                                                                                                                               >  2:745306/1‑77 (MQ=255)
                                                                        ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGaaa                                                           >  1:490235/1‑139 (MQ=11)
                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                        >  2:1111429/1‑87 (MQ=255)
                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                        <  1:1111429/87‑1 (MQ=255)
                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATAtttaat                                                                                               <  2:1675504/96‑4 (MQ=255)
                                                                                tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAt                                                                                               >  1:1675504/1‑96 (MQ=255)
                                                                                    gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            <  1:1700222/79‑1 (MQ=255)
                                                                                    gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            >  2:1700222/1‑79 (MQ=255)
                                                                                    gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          <  2:1805515/81‑1 (MQ=255)
                                                                                    gTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCa                                                                                                          >  1:1805515/1‑81 (MQ=255)
                                                                                        ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGG                                           <  1:597347‑M1/139‑1 (MQ=255)
                                                                                        ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGG                                           <  2:490235‑M1/139‑1 (MQ=255)
                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 >  1:485405/1‑69 (MQ=11)
                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 <  2:485405/69‑1 (MQ=11)
                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCgttggg                                                                                <  1:1287464/102‑6 (MQ=11)
                                                                                         tGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCgttggg                                                                                >  2:1287464/1‑97 (MQ=11)
                                                                                              gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 <  1:1418705/64‑1 (MQ=11)
                                                                                              gCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGc                                                                                                                 >  2:1418705/1‑64 (MQ=11)
                                                                                               cGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                          >  2:1548890‑M1/1‑133 (MQ=255)
                                                                                               cGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                          <  1:1548890‑M1/133‑1 (MQ=255)
                                                                                               cGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTccc                                                                                                                    >  2:42584/1‑60 (MQ=255)
                                                                                               cGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTccc                                                                                                                    <  1:42584/60‑1 (MQ=255)
                                                                                                     cGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAtt                                                                                              >  2:735085/1‑76 (MQ=255)
                                                                                                     cGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGAtt                                                                                              <  1:735085/76‑1 (MQ=255)
                                                                                                       ctctctCGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacctt                            >  2:1513242‑M1/1‑131 (MQ=255)
                                                                                                         ctctcGCTGGCGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg                          <  2:1703996‑M1/139‑11 (MQ=255)
                                                                                                               cTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCgg                                                                                          <  2:1538798/70‑1 (MQ=14)
                                                                                                               cTGACGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCgg                                                                                          >  1:1538798/1‑70 (MQ=14)
                                                                                                                 ggcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAg                                                                       <  1:1110079/84‑1 (MQ=255)
                                                                                                                 ggcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAg                                                                       >  2:1110079/3‑86 (MQ=255)
                                                                                                                  gcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCg                                                                                                                  >  1:1809337/2‑43 (MQ=17)
                                                                                                                  gcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCg                                                                                                                  <  2:1809337/42‑1 (MQ=17)
                                                                                                                  gcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                     <  2:1591223/86‑1 (MQ=255)
                                                                                                                  gcGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                     >  1:1591223/2‑87 (MQ=255)
                                                                                                                   cGCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg                <  2:659740/139‑1 (MQ=11)
                                                                                                                    gCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATTGGCAGAATATTAGATTGCGGATTCGCTTGAGAATTCCTGGGCTTTTGAAAGTGATGGTGGTTGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc               >  1:899123/1‑139 (MQ=11)
                                                                                                                    gCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                                                                                                  >  1:288609/1‑57 (MQ=255)
                                                                                                                    gCTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                                                                                                  <  2:288609/57‑1 (MQ=255)
                                                                                                                     cTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                     <  1:1463848/84‑1 (MQ=255)
                                                                                                                     cTCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAggg                                                                     >  2:1463848/1‑84 (MQ=255)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            >  1:236702/1‑45 (MQ=255)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATggg                                                                                                            <  2:236702/45‑1 (MQ=255)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGACTATTTAATTGCGGAt                                                                                        <  1:1224298/65‑1 (MQ=11)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGG                                           >  2:1756195‑M1/1‑109 (MQ=255)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGG                                           <  1:1756195‑M1/109‑1 (MQ=255)
                                                                                                                      tCGAGCCGAACCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt                                                                                        >  2:1224298/1‑65 (MQ=11)
                                                                                                                       cGAGCCGAACCTTAATCGAAGCTGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac               <  2:1000995‑M1/139‑22 (MQ=255)
                                                                                                                              aaCCTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagattta     >  1:435573‑M1/1‑108 (MQ=255)
                                                                                                                                 cTTAATCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGtt  <  2:197962/139‑1 (MQ=14)
                                                                                                                                     |                                                                                                                                          
CGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAA‑‑‑GCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTT  >  NC_000913/1286851‑1287118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: