Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,726,622	G→A	*200* (TAG→TAA)	nemR →	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,726,622	0	G	A	100.0%	85.9 / NA	28	*200* (TAG→TAA)	nemR	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (13/15);  total (13/15)

AGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTGGGCGCGATCACGGCGGCAAACCGTATTTTTATGGCACCGCTGACGCGTCTGCG  >  NC_000913/1726505‑1726747                                                                                                                      |                                                                                                                              aGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAga                                                                                                          >  1:1583116/1‑139 (MQ=255)        tACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCgg                                                                                                   <  2:1621576/139‑1 (MQ=255)        tACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCgg                                                                                                   <  1:492565/139‑1 (MQ=255)         aCGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCggg                                                                                                  <  2:1583116/139‑1 (MQ=255)                gtgGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCttt                                                                                           >  2:1294459/1‑139 (MQ=255)                    cTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCggg                                                                                                  <  2:1776536/128‑1 (MQ=255)                    cTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCggg                                                                                                  >  1:1776536/1‑128 (MQ=255)                         cgcgAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAg                                                                                                >  1:1334377/1‑125 (MQ=255)                         cgcgAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAg                                                                                                <  2:1334377/125‑1 (MQ=255)                               tCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCACTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGaaaaa                                                                            <  1:1294459/139‑1 (MQ=255)                                    aGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTa                                                                       <  1:959448/139‑1 (MQ=255)                                                cgcgCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTc                                                                    >  2:19308/1‑130 (MQ=255)                                                cgcgCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTc                                                                    <  1:19308/130‑1 (MQ=255)                                                                        aCGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTGGGCGCGATCACGGCGGCaaa                                   <  1:959893/139‑1 (MQ=255)                                                                              tGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGTCTTTATGTCATCTGAAAAACTGTa                                                                       <  2:1720403/97‑1 (MQ=255)                                                                              tGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTa                                                                       >  1:1720403/1‑97 (MQ=255)                                                                                     tGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAgac                                                                                                         >  1:583217/1‑56 (MQ=255)                                                                                     tGTAAAAAACATTATTGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAgac                                                                                                         <  2:583217/56‑1 (MQ=255)                                                                                               attattGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTggg                                                     <  1:172763/98‑1 (MQ=255)                                                                                               attattGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTggg                                                     >  2:172763/1‑98 (MQ=255)                                                                                                 tattGCGACGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTGGGCGCGATCACGGCGGCAAACCGTATTTTTATGGCACCGCTGAcg          >  1:1358116/1‑139 (MQ=255)                                                                                                         cGCCTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTGGGCGCGACCACGGCGGCAAACCGTATTTTTATGGCACCGCTGACGCGTCTgcg  >  2:1604123/1‑139 (MQ=255)                                                                                                           ccTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCggg                                                                                                  >  1:670423/1‑41 (MQ=255)                                                                                                           ccTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCggg                                                                                                  <  2:670423/41‑1 (MQ=255)                                                                                                           ccTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTAt                                                                                         <  1:1271008/50‑1 (MQ=255)                                                                                                           ccTGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTAt                                                                                         >  2:1271008/1‑50 (MQ=255)                                                                                                             tGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTc                                                                                      <  2:1434696/51‑1 (MQ=255)                                                                                                             tGCCGTTTAACAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTc                                                                                      >  1:1434696/1‑51 (MQ=255)                                                                                                                      |                                                                                                                              AGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGACGACCGGGAGCCTTTATGTCATCTGAAAAACTGTATTCCCCACTGAAAGTGGGCGCGATCACGGCGGCAAACCGTATTTTTATGGCACCGCTGACGCGTCTGCG  >  NC_000913/1726505‑1726747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑