Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,788,844 T→C V137A (GTC→GCC)  aroH → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,788,8440TC100.0% 245.9 / NA 69V137A (GTC→GCC) aroH3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/35);  total (34/35)

ACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGT  >  NC_000913/1788708‑1788979
                                                                                                                                        |                                                                                                                                       
aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGccc                                                                                                                                       >  2:537383/1‑139 (MQ=255)
          aaaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGAc                                                                                                                             >  2:511443/1‑139 (MQ=255)
              aCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAg                                                                                                                         >  1:1422049/1‑139 (MQ=255)
               ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGTGACCGAGt                                                                                                                        <  2:1193739/139‑1 (MQ=255)
               ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGt                                                                                                                        >  2:325374/1‑139 (MQ=255)
                cACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGtt                                                                                                                       <  2:1422049/139‑1 (MQ=255)
                         ttgtCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAATTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                   <  1:1310578/134‑1 (MQ=255)
                         ttgtCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                   >  2:1310578/1‑134 (MQ=255)
                            tCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGt                                                                                                           <  1:537383/139‑1 (MQ=255)
                                   gAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  2:63613/1‑139 (MQ=255)
                                             aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          <  1:63613/139‑1 (MQ=255)
                                             aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          <  1:633290/139‑1 (MQ=255)
                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGAc                                                                                                        >  2:1632467/1‑120 (MQ=255)
                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGAc                                                                                                        <  1:1632467/120‑1 (MQ=255)
                                                   gATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAtt                                                                                    >  2:186712/1‑139 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                   >  2:1764395/1‑85 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                   <  1:1764395/85‑1 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    <  2:505825/116‑1 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  1:505825/1‑116 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          >  2:514052/1‑126 (MQ=255)
                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          <  1:514052/126‑1 (MQ=255)
                                                           tttAAACGGCAGCTATCGGGTAAATCACGGTCTGGATCTTGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGt                                                                            <  2:1662110/139‑1 (MQ=255)
                                                              aaaCGGCAGCTATCGGGTAAATCACTGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgg                                                                         <  1:250705/139‑1 (MQ=255)
                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTggg                                                                        >  2:336571/1‑139 (MQ=255)
                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTggg                                                                        >  2:239480/1‑139 (MQ=255)
                                                                    cAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGcgcg                                                                   >  2:1322697/1‑139 (MQ=255)
                                                                      gCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                 <  1:336571/139‑1 (MQ=255)
                                                                            gggTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgcgc                                                           <  1:511443/139‑1 (MQ=255)
                                                                                  aTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtac                                                     <  2:498516/139‑1 (MQ=255)
                                                                                       ggTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCg                                                <  2:424301/139‑1 (MQ=255)
                                                                                           tGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                           >  2:757633/1‑60 (MQ=255)
                                                                                           tGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                           <  1:757633/60‑1 (MQ=255)
                                                                                            ggAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGta                                                      >  1:156852/1‑128 (MQ=255)
                                                                                            ggAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGta                                                      <  2:156852/128‑1 (MQ=255)
                                                                                             gAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                                >  1:804200/1‑101 (MQ=255)
                                                                                             gAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                                <  2:804200/101‑1 (MQ=255)
                                                                                               gCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  2:1733287/1‑79 (MQ=255)
                                                                                               gCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    <  1:1733287/79‑1 (MQ=255)
                                                                                                  ggCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGa                                                                                      >  2:141970/1‑90 (MQ=255)
                                                                                                  ggCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGa                                                                                      <  1:141970/90‑1 (MQ=255)
                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGt                                                       >  2:913780/1‑120 (MQ=255)
                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGt                                                       <  1:913780/120‑1 (MQ=255)
                                                                                                       gcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    <  1:43865/71‑1 (MQ=255)
                                                                                                       gcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  2:43865/1‑71 (MQ=255)
                                                                                                       gcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACcg                                <  1:561296/139‑1 (MQ=255)
                                                                                                        cAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                           >  2:975021/1‑47 (MQ=255)
                                                                                                        cAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                           <  1:975021/47‑1 (MQ=255)
                                                                                                             tACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAAt                          <  1:239480/139‑1 (MQ=255)
                                                                                                                   tACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTc                    >  1:387586/1‑139 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAg                                                                                                                         >  2:169806/1‑36 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAg                                                                                                                         <  1:169806/36‑1 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    <  1:725605/57‑1 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  2:725605/1‑57 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgcg                                                            >  2:465187/1‑97 (MQ=255)
                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgcg                                                            <  1:465187/97‑1 (MQ=255)
                                                                                                                       ggTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACg                                                        <  2:292379/99‑1 (MQ=255)
                                                                                                                       ggTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACg                                                        >  1:292379/1‑99 (MQ=255)
                                                                                                                       ggTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCa                >  2:935984/1‑139 (MQ=255)
                                                                                                                          aaaTGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    >  1:876523/1‑52 (MQ=255)
                                                                                                                          aaaTGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                    <  2:876523/52‑1 (MQ=255)
                                                                                                                                 cTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          >  2:415166/1‑55 (MQ=255)
                                                                                                                                 cTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                          <  1:415166/55‑1 (MQ=255)
                                                                                                                                 cTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTc      >  2:1206599/1‑139 (MQ=255)
                                                                                                                                  tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                 <  1:661855/79‑1 (MQ=255)
                                                                                                                                  tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                 >  2:661855/1‑79 (MQ=255)
                                                                                                                                   gggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtac                                                     <  2:384300/90‑1 (MQ=255)
                                                                                                                                   gggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtac                                                     >  1:384300/1‑90 (MQ=255)
                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTcc          <  1:1354017/132‑1 (MQ=255)
                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTcc          >  2:1354017/1‑132 (MQ=255)
                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCgg   >  2:327292/1‑139 (MQ=255)
                                                                                                                                     gcgcCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt  <  1:327292/139‑1 (MQ=255)
                                                                                                                                     gcgcCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt  <  2:387586/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGT  >  NC_000913/1788708‑1788979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑