| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,199,998 | A→G | pseudogene (677/948 nt) | yehH → | DUF4132 family pseudogene, defective yehI paralog, molybdate metabolism regulator, first fragment, molybdate metabolism regulator, second fragment 2, yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,199,998 | 0 | A | G | 100.0% | 190.4 / NA | 53 | pseudogene (677/948 nt) | yehH | DUF4132 family pseudogene, defective yehI paralog, molybdate metabolism regulator, first fragment, molybdate metabolism regulator, second fragment 2, yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/28); total (25/28) | |||||||||||
CACCGTTCCGCCAGCTCGACCGTAACAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAAGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGCGGTAGGCATGTCGCCAGCCGAACTCAGCGCTGAGC > NC_000913/2199863‑2200123 | caccGTTCCGCCAGCTCGACCGTAACAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAgggg < 2:435127/139‑1 (MQ=255) gCTCGACCGTAACAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGAt < 2:573120/139‑1 (MQ=255) aaCAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGa < 2:12858/139‑1 (MQ=255) aCAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGAt < 2:986547/139‑1 (MQ=255) tACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATg > 1:260312/1‑124 (MQ=255) tACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATg < 2:260312/124‑1 (MQ=255) aCGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCg > 1:1680906/1‑111 (MQ=255) aCGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCg < 2:1680906/111‑1 (MQ=255) aCGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCggatg > 2:1528160/1‑139 (MQ=255) aCGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCggatg < 2:86613/139‑1 (MQ=255) cGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCggatgg < 2:1017457/139‑1 (MQ=255) cccTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGa > 1:195880/1‑122 (MQ=255) cccTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGa < 2:195880/122‑1 (MQ=255) aCAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACca > 1:1512913/1‑108 (MQ=255) aCAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACca < 2:1512913/108‑1 (MQ=255) aCAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACca > 1:86030/1‑108 (MQ=255) aCAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACca < 2:86030/108‑1 (MQ=255) aaGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCG‑ACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCt > 2:1196422/1‑139 (MQ=255) cGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCg > 2:133115/1‑95 (MQ=255) cGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCg < 1:133115/95‑1 (MQ=255) cGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGAt < 1:1359281/106‑1 (MQ=255) cGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGAt > 2:1359281/1‑106 (MQ=255) cgcAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTc > 1:1335099/1‑139 (MQ=255) aaTGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCt < 2:1003309/139‑1 (MQ=255) gTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGtt > 1:164427/1‑139 (MQ=255) gACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATg > 1:1434032/1‑139 (MQ=255) aCCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGa > 1:1598576/1‑94 (MQ=255) aCCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGa < 2:1598576/94‑1 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCt > 2:601486/1‑109 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCt < 1:601486/109‑1 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTaa > 2:86159/1‑128 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTaa < 1:86159/128‑1 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGa > 2:1332841/1‑135 (MQ=255) cTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGa < 1:1332841/135‑1 (MQ=255) aaaTGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTg < 2:1335099/139‑1 (MQ=255) cccGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTggg < 1:342746/96‑1 (MQ=255) cccGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTggg > 2:342746/1‑96 (MQ=255) aGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCggatgg < 2:872823/75‑1 (MQ=255) aGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCggatgg > 1:872823/1‑75 (MQ=255) ggggCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAgg > 1:1068677/1‑48 (MQ=255) ggggCTGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAgg < 2:1068677/48‑1 (MQ=255) tGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGAt > 1:1814135/1‑49 (MQ=255) tGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGAt < 2:1814135/49‑1 (MQ=255) tGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCgga > 2:1159139/1‑53 (MQ=255) tGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCgga < 1:1159139/53‑1 (MQ=255) tGGCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGCGGTAGGCATGTCGCCAGCCGAACTCAg > 2:864121/1‑139 (MQ=255) gCGAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGCGGTAGGCATGTCGCCAGCCGAACTCAgcg < 1:1528160/139‑1 (MQ=255) gAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAgg > 2:1177095/1‑39 (MQ=255) gAATAAAGGCTGGATAAGGGGCGAACCACAGGATGGAgg < 1:1177095/39‑1 (MQ=255) aaaGGCTGGATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGCGGTAGGCATGTCGCCAGCCGAACTCAGCGCTGagc < 1:864121/139‑1 (MQ=255) gATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTa < 2:677546/70‑1 (MQ=255) gATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTa > 1:677546/1‑70 (MQ=255) gATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGc < 1:96378/96‑1 (MQ=255) gATAAGGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGc > 2:96378/1‑96 (MQ=255) | CACCGTTCCGCCAGCTCGACCGTAACAGCTACGCCCTGACAGAAGCCGAGCGCAATGCCAGTGAACTGACCCGCTGGGCAGGCAGAAAATGCCCGAGTGGTCGGGTCATGGGGCTGGCGAATAAAGGCTGGATAAAGGGCGAACCACAGGATGGAGGCTGGATCGGATGGATGATCAAACCTTTGGGTCGCTGGTCGTTAATCATGGAAATCGATGAAGGCTTTGCGGTAGGCATGTCGCCAGCCGAACTCAGCGCTGAGC > NC_000913/2199863‑2200123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |