Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,781,017	G→A	*397* (TAG→TAA)	lldD →	L‑lactate dehydrogenase, FMN‑linked

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,781,017	0	G	A	100.0%	215.1 / NA	66	*397* (TAG→TAA)	lldD	L‑lactate dehydrogenase, FMN‑linked
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (27/39);  total (27/39)

AAGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGA  >  NC_000913/3780884‑3781152                                                                                                                                      |                                                                                                                                        aaGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGtt                                                                                                                                    <  2:1432780/139‑1 (MQ=255)          aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGccccc                                                                                                                           <  2:1477360/139‑1 (MQ=255)          aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGccccc                                                                                                                           <  2:1236973/139‑1 (MQ=255)           aGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCt                                                                                                                          <  2:337216/139‑1 (MQ=255)             tGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCa                                                                                                                        <  1:535366/139‑1 (MQ=255)              ggCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGCGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCAc                                                                                                                       >  2:537497/1‑139 (MQ=255)                    gACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAAc                                                                                                                 >  1:1230538/1‑139 (MQ=255)                       gCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCct                                                                                                              <  2:451851/139‑1 (MQ=255)                                cgcgAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCGCTCCCTCAg                                                                                                     <  2:1230538/139‑1 (MQ=255)                                                   aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                                                  <  1:1624141/139‑1 (MQ=255)                                                    ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  2:778917/139‑1 (MQ=255)                                                    ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  1:1207338/139‑1 (MQ=255)                                                    ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  1:1381138/139‑1 (MQ=255)                                                     tACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc                                                                                <  1:468580/139‑1 (MQ=255)                                                         cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt                                                                                      <  2:259606/129‑1 (MQ=255)                                                         cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt                                                                                      >  1:259606/1‑129 (MQ=255)                                                            gATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgt                                                                         >  1:1237275/1‑139 (MQ=255)                                                            gATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta                                                                            >  1:1423070/1‑136 (MQ=255)                                                            gATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgta                                                                            <  2:1423070/136‑1 (MQ=255)                                                             aTTCGCTGGCGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta                                                                        <  1:537497/139‑1 (MQ=255)                                                              ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                                                  <  1:328044/128‑1 (MQ=255)                                                              ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                                                  >  2:328044/1‑128 (MQ=255)                                                              ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTCGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  1:30642/129‑1 (MQ=255)                                                              ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTCGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 >  2:30642/1‑129 (MQ=255)                                                                 gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                <  2:138950/79‑1 (MQ=255)                                                                 gCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                >  1:138950/1‑79 (MQ=255)                                                                      tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg                                                                          <  2:1741935/128‑1 (MQ=255)                                                                      tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatg                                                                          >  1:1741935/1‑128 (MQ=255)                                                                      tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAc                                                               >  2:893920/1‑139 (MQ=255)                                                                               tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGTAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta                                                                        <  2:1131770/121‑1 (MQ=255)                                                                               tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCctct                                                                                                            >  1:52625/1‑85 (MQ=255)                                                                               tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCctct                                                                                                            <  2:52625/85‑1 (MQ=255)                                                                               tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGAATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtatgta                                                                        >  1:1131770/1‑121 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                <  2:773444/64‑1 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                >  1:773444/1‑64 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCct                                                                                                              >  2:1788840/1‑82 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCct                                                                                                              <  1:1788840/82‑1 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTccc                                                                   <  1:436136/125‑1 (MQ=255)                                                                                gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTccc                                                                   >  2:436136/1‑125 (MQ=255)                                                                                     aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTc                                                                                                       >  2:1746910/1‑84 (MQ=255)                                                                                     aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTc                                                                                                       <  1:1746910/84‑1 (MQ=255)                                                                                       gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCa                                              <  2:947260/139‑1 (MQ=255)                                                                                           tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa                                                          >  2:1505420/1‑123 (MQ=255)                                                                                           tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa                                                          <  1:1505420/123‑1 (MQ=255)                                                                                            gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                <  2:1644761/52‑1 (MQ=255)                                                                                            gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTgcg                                                                                                                                >  1:1644761/1‑52 (MQ=255)                                                                                               tGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttttt                                      >  1:1594321/1‑139 (MQ=255)                                                                                                  ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCct                                                                                                              >  2:927718/1‑64 (MQ=255)                                                                                                  ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCct                                                                                                              <  1:927718/64‑1 (MQ=255)                                                                                                       tGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  2:241454/88‑1 (MQ=255)                                                                                                       tGGCTCCCATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 >  1:241454/1‑88 (MQ=255)                                                                                                              cATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCt                                                                                                                          >  1:313444/1‑40 (MQ=255)                                                                                                              cATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCt                                                                                                                          <  2:313444/40‑1 (MQ=255)                                                                                                              cATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 <  1:1490125/81‑1 (MQ=255)                                                                                                              cATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg                                                                                 >  2:1490125/1‑81 (MQ=255)                                                                                                              cATGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCt                       >  2:1052934/1‑139 (MQ=255)                                                                                                               aTGGCGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtcctgtctcttatac                      <  1:930970/139‑14 (MQ=39)                                                                                                                   cGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCt                                                                                                                          <  2:95244/35‑1 (MQ=255)                                                                                                                   cGAAAGGGAATGCGGCATAATCGTTTGCGCCCCCt                                                                                                                          >  1:95244/1‑35 (MQ=255)                                                                                                                     aaaGGGAATGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGga                <  2:1594321/139‑1 (MQ=255)                                                                                                                            aTGCGGCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc         <  2:1237275/139‑1 (MQ=255)                                                                                                                                 gCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGc                                               >  2:643810/1‑96 (MQ=255)                                                                                                                                 gCATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGc                                               <  1:643810/96‑1 (MQ=255)                                                                                                                                  cATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc                          <  1:220920/116‑1 (MQ=255)                                                                                                                                  cATAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc                          >  2:220920/1‑116 (MQ=255)                                                                                                                                   aTAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa  <  1:1052934/139‑1 (MQ=255)                                                                                                                                      |                                                                                                                                        AAGAGATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGA  >  NC_000913/3780884‑3781152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑