| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,815,908 | Δ1 bp | pseudogene (642/669 nt) | rph ← | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,815,908 | 0 | T | . | 100.0% | 108.3 / NA | 27 | pseudogene (642/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (14/13); total (14/13) | |||||||||||
AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACG > NC_000913/3815803‑3816019 | aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCg > 2:881922/1‑139 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCt > 2:833461/1‑139 (MQ=255) aTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCtt < 1:808157/139‑1 (MQ=255) ttGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 1:881922/139‑1 (MQ=255) tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCt > 1:729162/1‑90 (MQ=255) tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCt < 2:729162/90‑1 (MQ=255) ttACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTg < 2:386695/59‑1 (MQ=255) ttACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTg > 1:386695/2‑60 (MQ=255) aTGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa > 1:1168328/1‑139 (MQ=255) ttcgattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 2:776054/1‑76 (MQ=255) ttcgattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 1:776054/76‑1 (MQ=255) ttcgattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc > 2:70199/1‑139 (MQ=255) cgattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt < 1:556021/139‑1 (MQ=255) gattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCtt > 1:1305464/1‑39 (MQ=255) gattcCCCTCGGGCCAGAGCCAACAAGATGAG‑AGCTCtt < 2:1305464/39‑1 (MQ=255) cccTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt < 2:24391/90‑1 (MQ=255) cccTCGGGCCAGAGCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt > 1:24391/1‑90 (MQ=255) agagCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg > 2:985506/1‑84 (MQ=255) agagCCAACAAGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg < 1:985506/84‑1 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCtt < 2:1293457/74‑1 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCtt > 1:1293457/1‑74 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg < 2:1368419/88‑1 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg > 1:1368419/1‑88 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg > 2:222368/1‑121 (MQ=255) acaaGATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg < 1:222368/121‑1 (MQ=255) gATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 2:328894/77‑1 (MQ=255) gATGAG‑AGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat > 1:328894/1‑77 (MQ=255) | AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACG > NC_000913/3815803‑3816019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |