Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	3,728,118	(C)8→11	coding (1254/1455 nt)	xylB ←	xylulokinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3728110	6 (0.120)	25 (0.480) +CCC	20/186	1.1	80.5%	coding (1262/1455 nt)	xylB	xylulokinase
	?	NC_000913	3728111 =	6 (0.110)					coding (1261/1455 nt)	xylB	xylulokinase

ATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3727977‑3728110 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAC  >  NC_000913/3728111‑3728234                                                                                                                                        |||                                                                                                                             ATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCC                                                                                                                            >  1:163947/1‑139      CGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCATTGAGCGATTTTTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCACCCCCCCC                                                                                                                       >  1:367378/1‑139          ATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAAAGAGCGATTTTTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCCCCCCCGTA                                                                                                                   <  2:367378/139‑1                   CGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGA                                                                                                         >  1:572978/1‑139                          GGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCCCCCCCGTACGGTAATCGAGCTGCT                                                                                                   <  2:163947/139‑1                            TAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGAC                                                                                                <  2:572978/139‑1                              GATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCG                                                                                              <  2:599000/139‑1                                         TCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCC                                                                                                                           >  2:899705/1‑100                                         TCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCC                                                                                                                           <  1:899705/100‑1                                         TCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGC                                                                                   >  1:1104914/1‑139                                                 TAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT                                                                           <  1:587172/139‑1                                                  AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG                                                                          >  2:67086/1‑139                                                     TGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACG                                                                       <  2:568352/139‑1                                                      GCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACG                                                                       <  2:231227/139‑1                                                      GCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGC                                                                      <  1:67086/139‑1                                                        GGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCA                                                                    <  2:1104914/139‑1                                                           AACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGCACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCACCTGACGCCAGTA                                                                 >  1:1013596/1‑139                                                            ACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACATCCCCCCCCCCCCTCCGGTAATCGAGGGGCCGACAGCTGCTATCCGCCACCACCTGACGCCActc                                                                 >  2:105076/1‑136                                                                        GCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGC                                                                                             <  2:1333972/98‑1                                                                        GCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGC                                                                                             >  1:1333972/1‑98                                                                               CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCC                                             <  1:1271989/139‑1                                                                                 CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCT                                                                                                   >  2:1188566/1‑83                                                                                 CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑CCCCCCCCCCGTACGGTAATCGAGCTGCT                                                                                                   <  1:1188566/83‑1                                                                                                            ttggcGCGCCCAGGGCTGGCCCCCCCCCCCCCCCCCCCCGTACGGTAATCGTGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTATCACTTTGCGGTTTAA                  <  1:913690/134‑1                                                                                                                       catggcGG‑CCCCCCACCCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCAT      <  2:779417/133‑1                                                                                                                            ggccccaaccccCCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAC  <  1:1033013/127‑1                                                                                                                                        |||                                                                                                                             ATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑CCCCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3727977‑3728110 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAC  >  NC_000913/3728111‑3728234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.