New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1323147	45 (0.840)	22 (0.410)	9/208	3.2	48.9%	intergenic (‑65/‑73)	trpL/yciV	trp operon leader peptide/PHP domain protein
	?	NC_000913	= 3742633	1 (0.020)					intergenic (‑101/‑100)	yiaJ/yiaK	transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent
Rejected: Coverage evenness skew score above cutoff.

GGTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATGG  >  NC_000913/1323019‑1323281                                                                                                                                 |                                                                                                                                       ggTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCt                                                                                                                                      >  2:262561/1‑131 (MQ=255) ggTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAg                                                                                                                              >  2:766979/1‑139 (MQ=255) ggTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAg                                                                                                                              >  1:546591/1‑139 (MQ=255) ggTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGACAACAGCt                                                                                                                                      <  1:262561/131‑1 (MQ=255)            tGCCCGTTTCAGGAAGTGCGCCACCAACGTTTCAATACGAAAATTGCTTTCATTGTCGATATCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCa                                                                                                                   >  1:884848/1‑139 (MQ=255)            tGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCa                                                                                                                               >  2:148358/1‑127 (MQ=255)            tGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCa                                                                                                                               <  1:148358/127‑1 (MQ=255)             gCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAg                                                                                                                  >  2:1144191/1‑139 (MQ=255)             gCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAg                                                                                                                  >  1:1320537/1‑139 (MQ=255)             gCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAg                                                                                                                  <  2:546591/139‑1 (MQ=255)               ccGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGaa                                                                                                                <  1:609465/139‑1 (MQ=255)                             gcgcCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCg                                                                                                  >  2:1112185/1‑139 (MQ=255)                              cgcCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCgg                                                                                                 >  2:26814/1‑139 (MQ=255)                              cgcCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCgg                                                                                                 >  1:545116/1‑139 (MQ=255)                                                 cGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATAtt                                                                                                                        <  2:33204/97‑1 (MQ=255)                                                 cGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATAtt                                                                                                                        >  1:33204/1‑97 (MQ=255)                                                           tttCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTg                                                                    >  2:1194868/1‑139 (MQ=255)                                                                    cGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAg                                                           >  1:1268384/1‑139 (MQ=255)                                                                           cTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCgg                                                                                                 <  1:862255/94‑1 (MQ=255)                                                                           cTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCgg                                                                                                 >  2:862255/1‑94 (MQ=255)                                                                             ttttACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCt                                                                                                                                      <  1:584351/55‑1 (MQ=255)                                                                             ttttACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGaa                                                  <  1:1144191/139‑1 (MQ=255)                                                                             ttttACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACACCt                                                                                                                                      >  2:584351/1‑55 (MQ=255)                                                                                     gAACTTGCGTACTAGTTAACTAGTTTGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAg                                          <  2:884848/139‑1 (MQ=255)                                                                                     gAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCaaa                                                                                           <  2:1206133/90‑1 (MQ=255)                                                                                     gAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCaaa                                                                                           >  1:1206133/1‑90 (MQ=255)                                                                                      aaCTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACgg                                                                         >  1:4862/1‑107 (MQ=255)                                                                                      aaCTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACgg                                                                         <  2:4862/107‑1 (MQ=255)                                                                                      aaCTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGt                                         <  1:874669/139‑1 (MQ=255)                                                                                              tACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACg                                 <  2:545116/139‑1 (MQ=255)                                                                                                   gTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGaa                                                                                                                >  1:712243/1‑55 (MQ=255)                                                                                                   gTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGaa                                                                                                                <  2:712243/55‑1 (MQ=255)                                                                                                      aaCTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGcac                         <  2:1320537/139‑1 (MQ=255)                                                                                                             tCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATa                  >  2:122399/1‑139 (MQ=255)                                                                                                             tCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATa                  >  2:81648/1‑139 (MQ=255)                                                                                                             tCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATa                  >  1:1330975/1‑139 (MQ=255)                                                                                                                 tgatTAATTGTCAACAGCTCATTTCAGAATATTTGCCa                                                                                                                   <  2:1175746/38‑1 (MQ=255)                                                                                                                 tgatTAATTGTCAACAGCTCATTTCAGAATATTTGCCa                                                                                                                   >  1:1175746/1‑38 (MQ=255)                                                                                                                 tgatTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGa                                >  1:149801/1‑121 (MQ=255)                                                                                                                 tgatTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGa                                <  2:149801/121‑1 (MQ=255)                                                                                                                     tAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGac                                                       <  2:649687/94‑1 (MQ=255)                                                                                                                     tAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGac                                                       >  1:649687/1‑94 (MQ=255)                                                                                                                             aaCAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATgg  >  1:509634/1‑139 (MQ=255)                                                                                                                                 gCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGca                          <  2:1059718/111‑1 (MQ=255)                                                                                                                                 gCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGca                          >  1:1059718/1‑111 (MQ=255)                                                                                                                                 |                                                                                                                                       GGTGAATACACTGCCCGTTTCAGGAAGTGCGCCACCAACCTTTCAGTACGAAAATTGCTTTCATTGTCGATACCCTTTTTACGTGAACTTGCGTACTAGTTAACTAGTTCGATGATTAATTGTCAACAGCTCATTTCAGAATATTTGCCAGAACCGTTATGATGTCGGCGCAAAAAACATTATCCAGAACGGGAGTGCGCCTTGAGCGACACGAATTATGCAGTGATTTACGACCTGCACAGCCATACCACAGCTTCCGATGG  >  NC_000913/1323019‑1323281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.