New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 244174135 (0.650)4 (0.080) 3/204 5.2 10.3% intergenic (‑136/‑23) fabB/mnmC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme
?NC_000913 2441745 = 35 (0.670)intergenic (‑140/‑19) fabB/mnmC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCGCCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGACGCG  >  NC_000913/2441612‑2441879
                                                                                                                                     |                                                                                                                                       
ccTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAg                                                                                                                                    <  2:1177014/139‑1 (MQ=255)
   ctGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACg                                                                                                                                 >  1:1093436/1‑139 (MQ=255)
      tAAGTCGCACATAGAGTAAGTTTCGAATGCATAATAGCGTGCACTGGTACGGTGAACAAGTCCGATCAGCCACTTAATAGAGAAATTTGCGCAGCGTTACACACATCGCTAAGAGCGATCCACCACCTGTAAGACGAGt                                                                                                                              >  1:1100906/1‑139 (MQ=255)
      tAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGt                                                                                                                              >  2:794850/1‑139 (MQ=255)
                aTAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTCACTTACgcg                                                                                                                    >  1:805954/1‑137 (MQ=255)
                aTAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTg                                                                                                                    <  2:96490/139‑1 (MQ=255)
                 tAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGa                                                                                                                   <  2:1093436/139‑1 (MQ=255)
                   gagTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGaaa                                                                                                                 <  1:510182/139‑1 (MQ=255)
                              gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACactac                                                                                                          >  2:739966/1‑134 (MQ=255)
                              gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACactac                                                                                                          <  1:739966/134‑1 (MQ=255)
                              gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCAt                                                                                                     >  2:1339521/1‑139 (MQ=255)
                                             tACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCt                                                                                      >  2:1066948/1‑139 (MQ=255)
                                                    gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACacta                                                                                                           >  2:1274579/1‑111 (MQ=255)
                                                    gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACacta                                                                                                           <  1:1274579/111‑1 (MQ=255)
                                                    gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAAttt                                                                               >  2:625911/1‑139 (MQ=255)
                                                       cGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCA‑‑‑CCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCt                                                                         >  2:192224/1‑139 (MQ=255)
                                                          cGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCt                                                                         <  1:775297/139‑1 (MQ=255)
                                                             aCAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCA‑‑‑CCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGt                                                                   <  1:192224/139‑1 (MQ=255)
                                                                    cGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCa                                                                                          >  2:566625/1‑112 (MQ=255)
                                                                    cGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCa                                                                                          <  1:566625/112‑1 (MQ=255)
                                                                        cAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGt                                                           >  1:436795/1‑139 (MQ=255)
                                                                                 aaTAGAGAAATTTGCGCAGCCCTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTTCGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCCGTTTcctggga                                                  <  1:794850/139‑6 (MQ=255)
                                                                                     gagaAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCGGAATtttt                                              >  1:1329194/1‑139 (MQ=255)
                                                                                                              aTCGCTAATATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACacta                                                                                                           <  1:966507/53‑1 (MQ=255)
                                                                                                              aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACacta                                                                                                           >  2:966507/1‑53 (MQ=255)
                                                                                                              aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa                     >  1:314567/1‑139 (MQ=255)
                                                                                                              aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa                     >  2:200721/1‑139 (MQ=255)
                                                                                                              aTCGCTAAGATCGAGCCACCACCTGTAAAACGAGAAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa                     >  1:885767/1‑139 (MQ=255)
                                                                                                                cGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATg                                       <  2:1132503/119‑1 (MQ=255)
                                                                                                                cGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATg                                       >  1:1132503/1‑119 (MQ=255)
                                                                                                                    aaGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGc               <  2:436795/139‑1 (MQ=255)
                                                                                                                        tCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGa           >  1:382724/1‑139 (MQ=255)
                                                                                                                           aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGa                                                                                   <  2:1241720/64‑1 (MQ=255)
                                                                                                                           aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGa                                                                                   >  1:1241720/1‑64 (MQ=255)
                                                                                                                           aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga        >  1:244766/1‑139 (MQ=255)
                                                                                                                           aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga        <  1:1339521/139‑1 (MQ=255)
                                                                                                                           aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga        >  1:1081122/1‑139 (MQ=255)
                                                                                                                            gCCACCACCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAagag       <  1:200721/139‑1 (MQ=255)
                                                                                                                                ccaccTGAAAGCCGAGTAACTTACGTAAACACCTCCTCCATACAACCTGCAAACCTCAAATTTAAGGCTAAGGGAACACTTGTTTCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGAcgcg  <  2:1329194/136‑1 (MQ=255)
                                                                                                                                 caccTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGAcgcg  <  2:314567/137‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CCTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCGCCTGTAAGACGAGTAACTTACGTGAAACACTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGACGCG  >  NC_000913/2441612‑2441879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.