| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2441741 | 35 (0.650) | 4 (0.080) | 3/204 | 5.2 | 10.3% | intergenic (‑136/‑23) | fabB/mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | NC_000913 | 2441745 = | 35 (0.670) | intergenic (‑140/‑19) | fabB/mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCGCCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGACGCG > NC_000913/2441612‑2441879 | ccTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAg < 2:1177014/139‑1 (MQ=255) ctGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACg > 1:1093436/1‑139 (MQ=255) tAAGTCGCACATAGAGTAAGTTTCGAATGCATAATAGCGTGCACTGGTACGGTGAACAAGTCCGATCAGCCACTTAATAGAGAAATTTGCGCAGCGTTACACACATCGCTAAGAGCGATCCACCACCTGTAAGACGAGt > 1:1100906/1‑139 (MQ=255) tAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGt > 2:794850/1‑139 (MQ=255) aTAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTCACTTACgcg > 1:805954/1‑137 (MQ=255) aTAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTg < 2:96490/139‑1 (MQ=255) tAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGa < 2:1093436/139‑1 (MQ=255) gagTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGaaa < 1:510182/139‑1 (MQ=255) gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑ctac > 2:739966/1‑134 (MQ=255) gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑ctac < 1:739966/134‑1 (MQ=255) gAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCAt > 2:1339521/1‑139 (MQ=255) tACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCt > 2:1066948/1‑139 (MQ=255) gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑cta > 2:1274579/1‑111 (MQ=255) gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑cta < 1:1274579/111‑1 (MQ=255) gTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAAttt > 2:625911/1‑139 (MQ=255) cGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCA‑‑‑CCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCt > 2:192224/1‑139 (MQ=255) cGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCt < 1:775297/139‑1 (MQ=255) aCAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCA‑‑‑CCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGt < 1:192224/139‑1 (MQ=255) cGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCa > 2:566625/1‑112 (MQ=255) cGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCa < 1:566625/112‑1 (MQ=255) cAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGt > 1:436795/1‑139 (MQ=255) aaTAGAGAAATTTGCGCAGCCCTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTTCGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCCGTTTcctggga < 1:794850/139‑6 (MQ=255) gagaAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCGGAATtttt > 1:1329194/1‑139 (MQ=255) aTCGCTAATATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑cta < 1:966507/53‑1 (MQ=255) aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACa‑cta > 2:966507/1‑53 (MQ=255) aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa > 1:314567/1‑139 (MQ=255) aTCGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa > 2:200721/1‑139 (MQ=255) aTCGCTAAGATCGAGCCACCACCTGTAAAACGAGAAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATa > 1:885767/1‑139 (MQ=255) cGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATg < 2:1132503/119‑1 (MQ=255) cGCTAAGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATg > 1:1132503/1‑119 (MQ=255) aaGATCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGc < 2:436795/139‑1 (MQ=255) tCGAGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGa > 1:382724/1‑139 (MQ=255) aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGa < 2:1241720/64‑1 (MQ=255) aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGa > 1:1241720/1‑64 (MQ=255) aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga > 1:244766/1‑139 (MQ=255) aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga < 1:1339521/139‑1 (MQ=255) aGCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAaga > 1:1081122/1‑139 (MQ=255) gCCACCACCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAagag < 1:200721/139‑1 (MQ=255) ccaccTGAAAGCCGAGTAACTTACGT‑AAACACCTCCTCCATACAACCTGCAAACCTCAAATTTAAGGCTAAGGGAACACTTGTTT‑CCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGAcgcg < 2:1329194/136‑1 (MQ=255) caccTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGAcgcg < 2:314567/137‑1 (MQ=255) | CCTCTGTAAGTCGCACATAGAGTAAGTTTCGAATGCACAATAGCGTACACTTGTACGCCGAACAAGTCCGATCAGCCATTTAATAGAGAAATTTGCGCAGCCTTACACACATCGCTAAGATCGAGCCACCGCCTGTAAGACGAGTAACTTACGTGAAACA‑CTACTCCATACAACCTGCCAACCTCGAATTTAATGCTGAGGGTACACCTGTTTCCCGAGATTTTGACGATGTCTATTTTTCCAACGATAACGGGCTGGAAGAGACGCG > NC_000913/2441612‑2441879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |