Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,788,844 T→C V137A (GTC→GCC)  aroH → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,788,8440TC100.0% 164.3 / NA 46V137A (GTC→GCC) aroH3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (23/23);  total (23/23)

ATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGG  >  NC_000913/1788712‑1788978
                                                                                                                                    |                                                                                                                                      
aTTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                  <  2:1231629/139‑1 (MQ=255)
  tttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACcg                                                                                                                                <  1:217689/139‑1 (MQ=255)
          aCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAg                                                                                                                        <  2:947030/139‑1 (MQ=255)
                       gtCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATgg                                                                                                           >  2:996191/1‑139 (MQ=255)
                              ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCgg                                                                                                    <  1:1138983/139‑1 (MQ=255)
                                 aaGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCa                                                                                                 <  1:1260369/139‑1 (MQ=255)
                                         aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACcg                                                                                                                                <  2:218171/100‑1 (MQ=255)
                                         aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACcg                                                                                                                                >  1:218171/1‑100 (MQ=255)
                                         aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTg                                                                                         >  1:858171/1‑139 (MQ=255)
                                              cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAt                                                                                    >  1:1271101/1‑139 (MQ=255)
                                              cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAt                                                                                    >  1:531169/1‑139 (MQ=255)
                                              cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGGCTGGAGCTGGCGCGCAGATAACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGCTGACCGGTCAGTTTATTGCTGAt                                                                                    >  1:903299/1‑139 (MQ=255)
                                                 tCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTa                                                                                 <  1:45688/139‑1 (MQ=255)
                                                   cAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                               <  2:126320/139‑1 (MQ=255)
                                                       tttAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGt                                                                           <  1:573964/139‑1 (MQ=255)
                                                           aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATgg                                                                                                           <  1:1309753/103‑1 (MQ=255)
                                                           aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATgg                                                                                                           >  2:1309753/1‑103 (MQ=255)
                                                           aaCGGCAGCTATCGGGT‑AATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgggg                                                                      >  2:815290/1‑139 (MQ=255)
                                                                cAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGcgcg                                                                  >  2:825851/1‑139 (MQ=255)
                                                                  gCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                <  1:825851/139‑1 (MQ=255)
                                                                             aaTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGta                                                     <  1:996191/139‑1 (MQ=255)
                                                                                    gTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                               >  2:254165/1‑106 (MQ=255)
                                                                                    gTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                               <  1:254165/106‑1 (MQ=255)
                                                                                         gAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTc                                         >  1:797533/1‑139 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGcccc                                                                                                                                     >  1:1177969/1‑41 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGcccc                                                                                                                                     <  2:1177969/41‑1 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                  >  2:197936/1‑60 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                  <  1:197936/60‑1 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                               >  2:432100/1‑95 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                               <  1:432100/95‑1 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATcc                                   >  1:985264/1‑139 (MQ=255)
                                                                                               gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCAAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATcc                                   >  2:969028/1‑139 (MQ=255)
                                                                                                 gcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                  >  1:427172/1‑58 (MQ=255)
                                                                                                 gcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                  <  2:427172/58‑1 (MQ=255)
                                                                                                             tttACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGtt                                                                                                                      >  2:1047919/1‑42 (MQ=255)
                                                                                                             tttACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGtt                                                                                                                      <  1:1047919/42‑1 (MQ=255)
                                                                                                               tACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATgg                       >  1:199103/1‑135 (MQ=255)
                                                                                                               tACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATgg                       <  2:199103/135‑1 (MQ=255)
                                                                                                                     tAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCAct             >  2:360096/1‑139 (MQ=255)
                                                                                                                              tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGt                                                                                                          >  2:1003993/1‑37 (MQ=255)
                                                                                                                              tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGt                                                                                                          <  1:1003993/37‑1 (MQ=255)
                                                                                                                              tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgc                                                            >  1:689056/1‑83 (MQ=255)
                                                                                                                              tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgc                                                            <  2:689056/83‑1 (MQ=255)
                                                                                                                               gggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgc                                                            >  1:1012037/1‑82 (MQ=255)
                                                                                                                               gggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGgc                                                            <  2:1012037/82‑1 (MQ=255)
                                                                                                                                ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                              >  2:1260484/1‑95 (MQ=255)
                                                                                                                                ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                              <  1:1260484/95‑1 (MQ=255)
                                                                                                                                ggCGCCCCAACCGCGACCAAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGCAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCgg  <  1:969028/139‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                      
ATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGG  >  NC_000913/1788712‑1788978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑