| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 224,908 | G→A | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 224,908 | 0 | G | A | 100.0% | 82.8 / NA | 36 | noncoding (1138/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (17/19); total (17/19) | |||||||||||
AGATGGATTGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACA > NC_000913/224784‑225020 | agaTGGATTGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCaaa > 2:51962/1‑139 (MQ=255) aTGGATTGGTGCCTTCGGGAACTGTGAGAGAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTACCAGCGGTCCAGCCGGGAACTCAAAgg > 1:789175/1‑139 (MQ=255) gCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAg > 1:822668/1‑139 (MQ=255) gAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAAc > 1:715250/1‑139 (MQ=25) tgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCggg > 1:1091322/1‑105 (MQ=17) tgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCggg < 2:1091322/105‑1 (MQ=18) tgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCaa > 1:295473/1‑112 (MQ=17) tgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCaa < 2:295473/112‑1 (MQ=17) tgAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTggagg < 1:51962/139‑1 (MQ=17) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTccagccgg < 1:1171794/96‑1 (MQ=21) gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTccagccgg > 2:1171794/1‑96 (MQ=21) tgctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTgggg < 2:715250/139‑1 (MQ=18) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGAt > 2:668682/1‑139 (MQ=18) ctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCATTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGAt < 2:822668/139‑1 (MQ=16) tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATg > 1:628879/1‑139 (MQ=18) cAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCATCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtcatca < 2:838393/139‑1 (MQ=16) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTg > 2:88087/1‑116 (MQ=18) cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTg < 1:88087/116‑1 (MQ=18) gttgtGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt < 2:789175/139‑1 (MQ=18) gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc > 1:220820/1‑139 (MQ=17) ggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTgggg > 2:180424/1‑100 (MQ=21) ggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTgggg < 1:180424/100‑1 (MQ=18) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTacaca < 2:395691/139‑1 (MQ=18) tAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTacaca < 1:616270/139‑1 (MQ=18) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACg > 2:1359210/1‑139 (MQ=18) aGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACg < 2:186113/139‑1 (MQ=18) tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGaa > 2:1035755/1‑86 (MQ=25) tCCCGCAAAGAGCGCAACCCTTATCTTTTGGTGCCAGCGGTCCAGCCGGGAACTCAAAGGGGACTGCCAGTGATAAACTGGAGGaa < 1:1035755/86‑1 (MQ=11) cAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTgga < 2:1141121/77‑1 (MQ=19) cAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTgga > 1:1141121/1‑77 (MQ=255) gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGt > 2:505753/1‑96 (MQ=21) gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGt < 1:505753/96‑1 (MQ=18) aGCGCAACCCTTATCTTTTGTTGCCAGCGGTCTAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc < 2:730816/139‑1 (MQ=12) cgcAACCCTTATCTTTTGTTGCCAGCGGTccagccgg < 1:1118655/37‑1 (MQ=14) cgcAACCCTTATCTTTTGTTGCCAGCGGTccagccgg > 2:1118655/1‑37 (MQ=255) cccTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGTATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACa < 1:242110/139‑1 (MQ=17) cccTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc < 1:916093/106‑1 (MQ=17) cccTTATCTTTTGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc > 2:916093/1‑106 (MQ=17) ttttGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAgg > 2:366843/1‑102 (MQ=11) ttttGTTGCCAGCGGTCCAGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAgg < 1:366843/102‑1 (MQ=11) | AGATGGATTGGTGCCTTCGGGAACTGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACA > NC_000913/224784‑225020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |