| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,189,084 | C→T | G1245G (GGC→GGT) | rpoC → | RNA polymerase, beta prime subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,189,084 | 0 | C | T | 100.0% | 99.9 / NA | 32 | G1245G (GGC→GGT) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/14); total (18/14) | |||||||||||
AACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGCGTCAAGATCGCAAA > NC_000913/4188963‑4189215 | aaCGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATaa < 2:1175750/139‑1 (MQ=255) ccGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTAtcgt < 2:429951/139‑1 (MQ=255) ggAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGAtg < 1:942619/139‑1 (MQ=255) ccgcACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTa < 2:74711/97‑1 (MQ=255) ccgcACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTa > 1:74711/1‑97 (MQ=255) ccgcACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTa > 2:1048325/1‑139 (MQ=255) tctgcgtctgcgTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATc > 2:935296/1‑139 (MQ=255) cgtctgcgtGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTAtcgt > 2:1051728/1‑107 (MQ=255) cgtctgcgtGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTAtcgt < 1:1051728/107‑1 (MQ=255) ctgcgtGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAAcg > 2:728900/1‑139 (MQ=255) tGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTa < 2:93198/62‑1 (MQ=255) tGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTa > 1:93198/1‑62 (MQ=255) gTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACt < 1:894042/136‑1 (MQ=255) gTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACt > 2:894042/1‑136 (MQ=255) gTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAgg < 1:728900/139‑1 (MQ=255) gTTAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAgg < 1:1266586/139‑1 (MQ=255) ttAACGAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGt > 2:240873/1‑139 (MQ=255) gAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGAt > 1:1308063/1‑38 (MQ=255) gAAGTACAGGACGTATACCGTCTGCAGGGTGTTAAGAt < 2:1308063/38‑1 (MQ=255) gTACAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGGTGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATAct > 1:174847/1‑139 (MQ=255) aCAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATActct < 1:1048325/139‑1 (MQ=255) cAGGACGTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACtctc > 2:1332039/1‑139 (MQ=255) gTATACCGTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGCGTCa > 2:1370529/1‑139 (MQ=255) gTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGtt > 2:490171/1‑77 (MQ=255) gTCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGtt < 1:490171/77‑1 (MQ=255) tCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTAtcgttc < 2:1365484/47‑1 (MQ=255) tCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTAtcgttc > 1:1365484/1‑47 (MQ=255) tCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGTTGCGTa < 2:65083/62‑1 (MQ=255) tCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGTTGCGTa > 1:65083/1‑62 (MQ=255) tCTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGAGTCAAGATCGCa > 1:570296/1‑139 (MQ=255) cTGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGCGTCAAGATCGCaa > 2:249659/1‑139 (MQ=255) tGCAGGGTGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGCGTCAAGATCGCaaa > 2:127288/1‑139 (MQ=255) | AACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCTACCATCGTTAACGCGGGTAGCTCCGACTTCCTGGAAGGCGAACAGGTTGAATACTCTCGCGTCAAGATCGCAAA > NC_000913/4188963‑4189215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |