| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,549,001 | G→A | C65Y (TGC→TAC) | fimH → | minor component of type 1 fimbriae |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,549,001 | 0 | G | A | 100.0% | 249.0 / NA | 76 | C65Y (TGC→TAC) | fimH | minor component of type 1 fimbriae |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/39); total (37/39) | |||||||||||
GTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCA > NC_000913/4548867‑4549132 | gTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCAt > 1:294309/1‑139 (MQ=255)gTCATTCGCCTGTAAAACCGCCAACGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCAt > 2:304316/1‑139 (MQ=255) tCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGa > 2:139459/1‑139 (MQ=255) tCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGa > 2:337703/1‑139 (MQ=255) cGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGAt > 2:24560/1‑139 (MQ=255) gTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATcc > 1:464648/1‑139 (MQ=255) gTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTATATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCAACGCAAATCTTTTACCATAACGATTATcc > 2:926222/1‑139 (MQ=255) tAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCACATCTTTTACCATAACGATTATCCg < 1:926222/139‑1 (MQ=255) aaaCCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGa < 2:597478/139‑1 (MQ=255) aCCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 1:304316/139‑1 (MQ=255) ccGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAAc < 2:175590/139‑1 (MQ=255) tGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 2:464648/139‑1 (MQ=255) tGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 1:764680/139‑1 (MQ=255) tGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACa < 2:294309/139‑1 (MQ=255) gTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGa < 2:791519/139‑1 (MQ=255) aCCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACt < 1:337703/139‑1 (MQ=255) gCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 1:949005/1‑124 (MQ=255) gCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 2:949005/124‑1 (MQ=255) cccTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTcaca < 1:411193/139‑1 (MQ=255) ccTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCacac > 2:571872/1‑139 (MQ=255) aTTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGc > 1:941130/1‑139 (MQ=255) cGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGa > 2:510802/1‑139 (MQ=255) ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 1:139459/139‑1 (MQ=255) tGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt > 1:487935/1‑128 (MQ=255) tGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 2:487935/128‑1 (MQ=255) tGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATggc < 2:941130/139‑1 (MQ=255) gTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATggcg < 2:1189968/139‑1 (MQ=255) aaaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTa > 2:189931/1‑139 (MQ=255) aaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTAt > 2:616663/1‑139 (MQ=255) aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATc > 2:1206867/1‑139 (MQ=255) ccTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCt > 2:235103/1‑139 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTa > 1:860766/1‑87 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTa < 2:860766/87‑1 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGa < 1:220250/91‑1 (MQ=255) ttGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGa > 2:220250/1‑91 (MQ=255) tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCa < 1:875024/63‑1 (MQ=255) tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCa > 2:875024/1‑63 (MQ=255) tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 1:1206765/1‑80 (MQ=255) tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 2:1206765/80‑1 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 1:165896/1‑79 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 2:165896/79‑1 (MQ=255) gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAAtt > 1:16075/1‑139 (MQ=255) cgctcgtcgtGAATGTGGGGCAAAACCTGGTCTTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTa > 1:1046746/5‑118 (MQ=255) cgcTCGTCGTGAATGTGGGGCAAAACCTGGTCTTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTa < 2:1046746/118‑1 (MQ=255) gtgGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTaa < 2:16075/139‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAGATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat > 1:244161/1‑139 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa > 2:851049/1‑47 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATaa < 1:851049/47‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:351507/1‑130 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:351507/130‑1 (MQ=255) gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat > 1:928455/1‑139 (MQ=255) cAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAAtata < 2:928455/139‑1 (MQ=255) cAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAAtata < 1:24560/139‑1 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTACCa < 1:761722/36‑1 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTACCa > 2:761722/1‑36 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 1:571872/139‑1 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 1:616663/139‑1 (MQ=255) ccTGGTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc < 1:1206867/139‑1 (MQ=255) cTGGTCGTGGATCTTTCGACGCAGATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCa < 2:244161/139‑1 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca > 1:908654/1‑68 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTca < 2:908654/68‑1 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 1:1060344/83‑1 (MQ=255) ggTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt > 2:1060344/1‑83 (MQ=255) gTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 2:1307449/1‑49 (MQ=255) gTCGTGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 1:1307449/49‑1 (MQ=255) tGGATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTa < 2:1206456/139‑1 (MQ=255) gATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCgg < 2:621548/110‑1 (MQ=255) gATCTTTCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCgg > 1:621548/1‑110 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGaaa < 2:261922/38‑1 (MQ=255) ttCGACGCAAATCTTTTACCATAACGATTATCCGGaaa > 1:261922/1‑38 (MQ=255) tCGACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTc > 2:682216/1‑139 (MQ=255) gACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCt > 2:638474/1‑139 (MQ=255) gACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCt < 1:510802/139‑1 (MQ=255) gACGCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCt < 1:235103/139‑1 (MQ=255) gCAAATCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTacc > 1:25900/1‑139 (MQ=255) aTCTTTTACCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTAccacca > 2:649558/1‑139 (MQ=255) | GTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCA > NC_000913/4548867‑4549132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |