New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 3262327	NA (NA)	18 (0.090)	17/424	NT	10.7%	intergenic (+145/+4)	Y75_RS16205/tdcD	IS5‑like element IS5 family transposase/propionate kinase
	?	NC_007779	= 3360311	151 (0.780)					coding (1259/1419 nt)	Y75_RS16700	glutamate synthase subunit GltD

TTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/3262139‑3262327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAAC  <  NC_007779/3360311‑3360075                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTG                                                                                                                                                                                             >  2:1784476/1‑239                    ACGTCAGTGGGAGAGATCTCACTTAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCC                                                                                                                                                                          >  1:1160794/1‑239                                                        AACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGA                                                                                                                                       >  1:930369/1‑238                                                         ACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAACCGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAA                                                                                                                                      >  2:1715733/1‑238                                                           GCCTTAAATGGGGAAGAAACGGTCAAAATAGGCTGATTAAAGGCATTGACGGGAGAAAAAATCGGCTCAAGCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCAGGATCACCGCATCTGCCGGAACGATATGTTCGGAACCT                                                                                                                                   <  2:194969/239‑1                                                                     GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATC                                                                                                                          >  1:1413884/1‑238                                                                                        AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTT                                                                                                      <  1:939681/239‑1                                                                                               TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCC                                                                                               >  2:1368620/1‑239                                                                                               TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGAACTCCGAGCGGCGACGGCCTTTGGCGTCC                                                                                               >  1:913664/1‑239                                                                                                    GGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGCACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGCCGGCCTTTGGCGTCCGGTTC                                                                                          >  1:2017531/1‑239                                                                                                       ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCC                                                                                       <  1:1368620/239‑1                                                                                                        TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGC                                                                                        >  1:751703/1‑237                                                                                                        TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGC                                                                                        <  2:751703/237‑1                                                                                                                                              AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGC                                                 <  2:1413884/238‑1                                                                                                                                                      GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGT                                        >  1:1907381/1‑239                                                                                                                                                        GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTT                                       <  1:1784476/238‑1                                                                                                                                                                         TCCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGAAGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCG                      >  1:1562180/1‑238                                                                                                                                                                          CCCCGCTTATTCGCACCTTCCCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCG                      >  2:1950825/1‑237                                                                                                                                                                                              CCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAAC  >  1:419722/1‑237                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/3262139‑3262327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTTGTGAATCCAGCTCGACGCTGTGTTTTGCCAGCCATTCCATGTTGTGTGGACGGAAACCAAACGCCATGATCACCGCATCTGCCGGAACGATATGTTCGGAACCTGCAACGATCTCCGCGCGGCGACGGCCTTTGGCGTCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAAC  <  NC_007779/3360311‑3360075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.