| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 3970002 = | 184 (0.950) | 4 (0.020) | 4/414 | NT | 2.3% | coding (822/1650 nt) | treF | alpha,alpha‑trehalase TreF |
| ? | NC_007779 | 3970183 = | 168 (0.900) | coding (641/1650 nt) | treF | alpha,alpha‑trehalase TreF | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/3970242‑3970002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTCGA > NC_007779/3970183‑3970420 ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGC < 1:129970/239‑1 AGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTT > 2:278750/1‑238 AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCA < 1:1323932/132‑1 AATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCA > 2:1323932/1‑132 CGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACG < 1:278750/239‑1 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:159438/1‑239 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:52136/1‑239 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:568935/1‑239 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:581163/1‑239 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:892521/1‑239 CGGTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGGTCGCGGGTTAGCACCGGCCACAGCTGGTC > 1:266369/1‑239 GTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCCCGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTCGA > 2:2027732/1‑239 ATGCATGGCCGATAACTTCGCCTGGATGATCGAAAACTACGGTCACATCCCCAACGGCAACCGCACCTATTATTTGAGCCGCTCGCAACCACCGGTTTTTGCGCTGATGGTGGAGTTGTTTGAAGAAGATGGTGTACGCGGTGCGCGCCGCTATCTCGACCACCTTAAAATGGAATATGCCTTCTGGATGGACGGTGCAGAATCGTTAATCCCTAATCAGGCCTATCGCCATGTTGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/3970242‑3970002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcggTTGCCGTTGGGGATGTGACCGTAGTTTTCGATCATCCAGGCGAAGTTATCGGCCATGCATTTCAGCAAATCTTCCCGACCACTTTCCGCCAGCCCCAGCATGGTGAAATAGGAATCCCAATAGTAGGTTTCGCTAAAACGGCCGCCCGGGACAATATATGACTGCGGCAGCGCCAGCAGAGAAGACCACGGAATGTGATCCTGTGGTTCGCGGGTTAGCACCGGCCACAGCTGGTCGA > NC_007779/3970183‑3970420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |