| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,153,826 | G→T | 36.2% | intergenic (+43/+22) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,153,826 | 0 | G | T | 36.2% | 25.6 / 13.6 | 50 | intergenic (+43/+22) | Y75_RS10870/pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| Reads supporting (aligned to +/- strand): ref base G (27/3); new base T (11/7); total (39/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.30e-01 | |||||||||||
AGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGG‑GATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_007779/2153641‑2154061 | aGTGAAAAATCAAAAAAGAAGTTTTTCCGGCTTGGATG‑CTTCGGGTGGGAAATAAATTTTAGGGTGTTTATACTTTTGATCTTTTTTTTTTCTCCTACA‑AAAAAGAAGAGCCCGATGAGTAAATAAAAAATTTTGTTCTATAAACACCTTTTATTTTTTTTGTTTAATCTGGCGTTAAAT‑TTGTTTTC‑TT‑AAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 2:676573/238‑1 (MQ=255)aGTGAAAAAACAAAAAAGAAGATATTTCAGCCTGATTTTATACGGGGGGT‑AAAAAAATTGGCGGGGTTTATACTATTTATTTTTTTTGGCTCACC‑ATCAAAAAAGAAGACCCCGAGGTGTTAATAGAAAATTTTGTTCGCTAACCAGCCTTTATATTTTTTTTTTACTCGGGCGGTTGAG‑TTGTTGTC‑TT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 2:2232942/238‑1 (MQ=255) ttccggcgtTTATACTTTTGTTTCTTTATTGGTCACCTATC‑AAAAAAAAAAAGCCGGCGAGATAAGATAAAAATTAGTTCACAAAACAGCCTTTATATTTATTTTTCAACGTGGCGGTTTAA‑TTGTTGTT‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTc < 1:295925/236‑1 (MQ=255) ttGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTTTTGTC‑TT‑ACA‑TCCCCCTGAGAAACTTACTCTCCCCCCACAGCCAGCGCCAACGCTTTATACTCATCCCTACGCTCGTGTACCGCCCGGAG‑GGAAAAAAACCGC‑TTTATCAATTCTGGTCACAAAtatcatt > 2:355326/1‑233 (MQ=255) tGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTT‑TT‑CAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAgttg > 1:85878/1‑239 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTTTC‑TT‑CAA‑CCGCCATGAAAAAAATACTCTGCCCCCAACCCCAGTGCCCACGTTTTTTCATCATCCGTACCCTCCTTTACCGCCGGGCC‑GGGCAAAAAACTC‑TTTAACAATTACGGAAATaaaatctttcct > 2:1010580/1‑230 (MQ=255) gATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑TAA‑ACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTTTCATCATCCGGACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑CTTAACAATTCAGGTAATAAATCGAgttgt > 1:1401691/1‑239 (MQ=255) aTCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGGCGT‑GAATTGTA‑TT‑CGA‑CAGCGGTGAGGAAAGAACTCGGTCCCCACCACCAGTGCCGGAGTTTTTCTATCAAACTAACGCTCGCTTCCCGCCGGGCG‑GGGCAAAAACAGC‑TATTAAAATTCAGTTGATAAAAAGAgttgtt > 2:1106392/1‑239 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTTTA‑TTTTTGTC‑TT‑CAA‑CCCCCCTGAGAAAATCACCCTCCCCACCACGCCCCTGCCCACCCTTTATTACCCTCCCTACCCTCTCTTTCCCCCCGGCC‑GGCCACAAACTGC‑TTTTACAAATTAGGGAATAAATCAAgttgtttcct > 2:1130530/1‑234 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTTAA‑TTGTTTTT‑TT‑CAA‑CCGCCATTAGAAAATCACCCTTCCCACAGCGCCAGTGCCACCGTTTTTTTATCATCCGCACGCCCGTTTTCCGCCCGGCT‑GGACAAAAAATCC‑CTTAACAAATCCGGTAAAAAAAACAGTTGTTCCttg > 2:1705652/1‑237 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTTTC‑TT‑CAA‑ACGCCATGAGAAACTCAATCTGCCCACAGCGCCAGTGCCAACGGTTTATCATCATCCGTACGCCCGTTTTCCGCCGGGCG‑GGACAAAAACTGC‑TTTAACAATTCCGGGAATAAAACGAGTTGTTCCTGc > 1:1454230/1‑239 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTTGT‑TT‑CAA‑CCGCCATGAGAAAATCACTCCTCCCCCAGCAGCAGTGCCCAAGATTTATCATCATACGCACGACCCTTTTCCCCCGGCGT‑GGCCAAAAACAGCGTTTAACAA‑ACCGGGAATAAAACCAGTTGTTCCttg > 2:739650/1‑237 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑TAA‑CCGCCCTGAGAAACTCACTCTGCCCCCAGCGCCCGGGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGGCAAAAACTGC‑TTTAACAATTCAGGGAATAAATCGAGTTGTTCCTGc > 1:2106376/1‑239 (MQ=255) ttATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑ACGCCATGAGAAAATCACTCTCCCCACAACCCCCGTGCCTAAGTTTTTTTATCATCCGTACGCTCGTTTACCGCCGGGGT‑GGGGCAAAACAGC‑TTTAACAATTCAAGTAATAAATCCAGTTGTTTCTGc > 2:850291/1‑239 (MQ=255) tATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTTTC‑TT‑CCA‑CCGCCATGAGAAACACAATCTCCCCACAGCGCCCGTGCCCACGATTTTTTATACTCCATACGCCCGCTTACCCCCCGGCT‑GGGCCAAAAACAC‑TTTTACAAATTATGTAATAAATCGAGGTGTTCCTGCg > 2:340638/1‑239 (MQ=255) ggTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTTTTGAC‑TT‑TAA‑CCCCCATGAGATACTCACTCTCCACACAACCTCAGGGTCCACTAGTTATAATCATCCGTACGCTCGCTTACCGCCGGGCT‑GGACAAAAAATGC‑GTTAACAAATCGGGTAATAAACAGAGATGTTCCTGCGtt > 2:1194908/1‑237 (MQ=255) ggTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCCCCCGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCggt > 1:1542928/1‑235 (MQ=255) ggTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGTGTA‑TTTTTGTC‑TT‑TAA‑CCCCCCCGAGAAAAACACTCTGCCCCCAACGCCAGTTGCACCGCTTTATTCTCATCCAGCCCCCCCTTTCCCCCCGGGGTGGGCCAAAAACAGT‑TTTAACAA‑TCAGGGAATAAAACGCGTTTGTCCcgcggt > 2:2198558/1‑235 (MQ=255) gTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCCCCATGAGAAACTCCCTCTGCCCAAAGCGCCAGAGCCAACGTTTTTTCATCATCCGTACGCCCGTTTACCCCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGAAATAAATCTAATTGTTCCTGCCTtgct > 1:2189659/1‑239 (MQ=255) tCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑ATGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGGGCCAACGGTTTATCATCATCCGTACGCTCGTTTACCGCCGGGGT‑GGACAAAAAATGC‑TTTTAAAATTCAGGGAATAAATCGAGTTGTTCCTGCGGtgct > 1:210217/1‑238 (MQ=255) cACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCTCGTTTACCCCCGGGCT‑GGACAAAAAATGC‑TTTAACAATTCAGGTAATAAATCGAGGTGTTTCTGCGTtgctg > 1:923069/1‑238 (MQ=255) tC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTTGTGTC‑TT‑CAA‑CCGCCCTTAGAAACTCACTCTGCCCACAGCGCCCGGGCCAACGTTTTATTATCATCCCTACGCCCGGTTAACCCCCGGCC‑GGACCAAAACAGC‑TTTAACAATTCCGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAg > 1:812198/1‑239 (MQ=255) cAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTTTTGTC‑TT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCGTTTACCGCCGGGCT‑GGACAAAAAATGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGt > 1:647057/1‑238 (MQ=255) cAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑ACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAAGTTTTATTATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAAAAATTCAGGGAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGt > 1:959869/1‑238 (MQ=255) gaagaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTTTTTTC‑TT‑CAA‑ACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGGTTTTTCATCATCCCTAAGCCCGGTTAACCCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGGTGTTCCTGCGTTGCTGCCGCCAGTCCAttc > 1:638241/1‑238 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTTAA‑TTTGTTTC‑TT‑CTA‑CCACCCTTAGAAAATTACTCTGCCCACACAGCCAGGGCCAACGTTTTATTATCACACCGACGCTCGTTTTACCCCGGGCG‑GGACAAAAACCGC‑TTTAAAAATTCCGGTGATAAATCGAGTTGTTTCTGCGTTGCTGCCCCCAGTCCATTGtaa > 2:1650508/1‑239 (MQ=255) gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGGTGGA‑TTTTTGTC‑TT‑CAA‑CCGCCCTTGGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGGTTTATCATTATCCCTACGCCCGTTTATCGCCCGGCC‑GGACAAAAACTGA‑TTTTAAAATTCAGGTAATAAATCGAGTTTTTCCTTCTGTGCTCCCGCCAGTCCATTGaaa > 2:1166489/1‑239 (MQ=255) acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCCGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACgggg > 1:1525331/1‑239 (MQ=255) cgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGAGGTGTAA‑ATTTTTTA‑TT‑TTA‑CCGCCATGAGAAAATAACTCTTCCCCCAGCACCCGTGGCCACGTCTTTTAATCATATCTAACCCCGTTTATCCCCCGGAG‑GGATCAAAAAAGC‑TTTAAAAATTCAGGTAATAAAACGAGTTGTTTCCGAGTTGATTCGCCCACACCATTGAAAAACggggg > 2:1119593/1‑238 (MQ=255) aaagaaaaaTTTTTTCTCTAACCAGACTTTTTATTTTTTTTTAAACCGGGTGTTTTAT‑TTGTTTTC‑TC‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaagaaa < 1:1630117/234‑1 (MQ=255) aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTTTC‑TT‑TCT‑CCGCCCTGAGACACTCCCTCTGCCCACAGCGCCAGGGCCAACGTTTTATCCTCCTCCGTAAGCTCGCTTACCGCCGGGCT‑TGGCAAACACCGC‑TTTAACCATTCTCGTAATAAATCGCGTTGTTTCTGCGTTGCTGCCGCCCGTCCCTTTAAAAACGGGGTAAATAAAGGca > 1:1286125/1‑237 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCCCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAACTTAGGTAATAAATAGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACGGGGTAAAGAAAAGCACAt > 1:459435/1‑239 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGACGGGTTCA‑TTGTTGTC‑TT‑CAA‑CTGCCTTGAGAAACTTATTCTTCCCACCGCGCCAGTGCCAAAGTTTTATCATCATCCCTACCCCCGTTTAACCCCGCGCC‑GGCCAGAAACTTC‑TTTTACAATTTTGGTAATAAAACCGGATTTTCCCGCGTTTGTGCCGCCCGTCCATTTAAACAACGGGTAAAGAAAGGCACAATAGgaga > 1:2223254/1‑239 (MQ=255) aaccagtctttATTTTTTTTTTTAAACCGGGGGGTTGAT‑TTTTTTTC‑TT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTAt < 1:1563579/230‑1 (MQ=255) aTCAGCCGTTATATTTATTGTTTAAACTGGCGGATGTA‑TATTTCTC‑CT‑TCA‑CCGCCACGAGAAACTAACTCTGCCCCCAGAGCCCCTACCAAAACTTTTTATTCATCCCTACGCTCCTTTCTCGCCCGGCC‑GGGACAAAACTTC‑CTTTACAATTCAGCGAATAAATCCAGCTGGTGCTTCGGTGCTGCCTCCCCTTCATTGTAAAAACGGGTAAAGAAAGGCACATTAGGAGAATTAt > 2:137840/1‑238 (MQ=255) gctgTTATTTTTTTTGTATAACCTGGGTGATACT‑TTGTTCTC‑TC‑CAA‑CCGCCATGAGAACCTCACTCTCCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 1:1106392/236‑1 (MQ=255) cgcGTTATTTTTTTTTTTTACATGGGCGGTT‑AA‑TTTTTTTCTTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 1:341204/237‑1 (MQ=255) agtttttttttttttttAAACGGGGGGTTTAATTTTTTTTC‑TC‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa < 1:320778/232‑1 (MQ=255) ttATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCatat > 1:221803/1‑239 (MQ=255) tattGTTTAAACTGGCGGTTGAA‑TTTTTGTC‑TT‑TAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCCGTGGCAACGTTTTATCATCATCCGTACGCCCGCTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAACGGGGTAAAGAAAGGCAACTGAGGAGAATTATCCAGCATATTTAACg > 1:1574471/1‑238 (MQ=255) attGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATAttt > 1:1599851/1‑233 (MQ=255) tGTTTAAACTGGCGGTTGGA‑TTTTTGGC‑TT‑CCA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCCCGTTTACCGCCGGGCG‑GGGCAAAAAATGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCCGCGTTGCTGCCGCCCGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAg > 1:1712596/1‑239 (MQ=255) tGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTGATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAg > 1:560908/1‑239 (MQ=255) tGTTTAAACTGGCGGTTGAA‑TTGTTGTA‑TT‑AAA‑CCGCCATGAGGAAATCCCTCTGCCCACAGCGCCAGTGCCAAAGTTTTTTCATCATCCGTAAGCTCGTTTACCGCCGGGCC‑GGGCAAAAAATGC‑TTTAACAATTCAGGTAATAAATCAAGTTGTTCCTGCGTTGCTGCCGCCAGTTCATTGGAAAAAGGGGTAAAGAAAGGAACATGAGGAGAAATATCCAGGAAATTTAAAGACAg > 1:514573/1‑239 (MQ=255) atAACCTGGCGGTTAAT‑TTTTTGTC‑TC‑AAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCg < 1:739650/238‑1 (MQ=255) tAAACCGGGGGTTTAA‑TTTTTTTC‑TTCCAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCg < 1:1130530/239‑1 (MQ=255) aaaCTGGCGGTTGAA‑TTGTTGTC‑TT‑TAA‑CCGCCATGAGAAACTTACTCTGCCCCCAGCGCCAGTGCCAAAGTTTTATCATCATCCGGACGCCCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTTACAATTTAGGTAATAAATCGAGTTGTTTCTCCGTTGCTGCCGCCAGTCCCTTGAAAAACGGGGAAAAGAAAAGCACATGAGGAGAATTATCCAGGATATTTTAAGCCCGTc > 1:2199852/1‑236 (MQ=255) gcgTTGAA‑TTTTTTTT‑CT‑CAACCCGCCATGAGAAACCCCCTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATa < 1:59110/236‑1 (MQ=255) cGGTTGGA‑TTTTTTTC‑TT‑TAA‑ACGCCCTGAGAAAAGCACTCTGCCCACAGCGCCAGGGCCAACGTGTTATCATCATCCGTACGCCCGTTTACCCCCGGGCT‑GGGCAAAAAATTC‑TTTTACAATTCAGGTGATAAAACGAGTTGTTTCTGCGTTTCTGCCGCCCGTCCATTGAAAAACGGGGGAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAAAGCCAAGCTCTGGagaa > 2:1083231/1‑235 (MQ=255) cGGGTGAA‑TTGTTTTT‑TT‑CCA‑CCACCACGAGAAAATCACTCTGCCCACAGCGCCAGTGTCAAAGTTTTATCATCCACCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAAATGC‑TTTAAGAATTCAGGTAATAAATCGAGTTGTTCCTTCGTTGCGGCCGCCCGTCCATTGAAAAACGGGGGAGAAAAAGGCCCATGAGGAGAATTATCCACCATAATTAACGCCAATCCCCGGCTAcc > 2:2055026/1‑239 (MQ=255) gtC‑TT‑CAA‑CCGACATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCCTCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt > 1:1932286/1‑236 (MQ=255) | AGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGG‑GATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATC‑CAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑TTGTTGTC‑TT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCTCGTTTACCGCCGGGCT‑GGACAAAAACTGC‑TTTAACAATTCAGGTAATAAATCGAGTTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_007779/2153641‑2154061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |