| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 2,345,442 | A→C | 18.1% | V1133G (GTG→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 2,345,442 | 0 | A | C | 18.1% | 116.4 / 2.3 | 74 | V1133G (GTG→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| Reads supporting (aligned to +/- strand): ref base A (28/28); new base C (2/15); total (30/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTTATTTCACCCCGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGTTCTG > NC_007779/2345207‑2345671 | ttttATTTCACCCCGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAATCATCCTGCTGCACGCCCTCATAAAACAccc > 1:192009/1‑238 (MQ=255) ttCACCCCGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCTCCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCAcctgcg‑cct < 1:1708964/239‑1 (MQ=255) ccccGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACCACCCCCTCTACCCCCCGCTAAAACACCTCCC‑CCTGCgg > 2:537735/1‑239 (MQ=255) ccccGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCCCGCACGGTTAGCGGCGGTAAAACAATCCCTCCGTACGCCCCGCTAACACAcccccg‑cccctgg > 2:436571/1‑234 (MQ=255) tggttCACCGCATCGTCACTGATAGGGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAAGGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAAt < 2:182938/236‑1 (MQ=255) cACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGCAGATCGCGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAGTATCCCGCTTCATCCCCTGCTAAATCACCAGCG‑CCCGCGGGTCAAGcaac > 1:1287020/1‑236 (MQ=255) ccGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACCTCCTCCTTCCCCCCCCGGTAAATCACCTCCC‑CCTGCGGTTCTATcacccc > 1:1943563/1‑236 (MQ=255) aTCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCTCCTGCG‑CCTGCGGTTCAATcaccacacca < 1:2156393/238‑1 (MQ=255) tCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACAACCTGCTGCCCCCCCCGCTAAAACACCCTCG‑CCTGCGGGTCAACAaccccaccac > 1:1425884/1‑238 (MQ=255) tCGTCACTGATAGTGCTGCCATCCTCTTCAATTTACGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGGATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAACATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGAGGTAAAATAATCCTGCTGCCCGCCCCGATACACCAACCGCG‑CCCGCGGATTAATGaacacaccac > 1:293687/1‑238 (MQ=255) gTCACTGATAGTGCTGCCCTCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCCGTACGCCATTCGCTGTGTAACCCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACCCGCGCGCACGGTTAGCGGCGGTAAAATCATCCTTCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCCCGcc < 1:1980358/239‑1 (MQ=255) tCACTGATAGTGCTGCCGTCCTCTTCAAGGTCCGTCGAAGGGGGGTCGTGATAATAATTCAGATCTAATGTGGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCTTCACCCTGCGATTGTGACACGCGCGCACGGTTCGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑TCTGCGGTTCAATCACCACACCACGcc < 2:1319375/238‑1 (MQ=255) ccactgtgtgTGCTTCCCTCCTCTTCAATGTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATGCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAAGCACCTGCG‑CCTGCGGTTCAATCACCACACCACGcc < 2:1246168/229‑1 (MQ=255) gATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTa < 1:537735/239‑1 (MQ=255) tAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTTATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAAc < 1:1086841/239‑1 (MQ=255) tAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAAc < 1:95209/239‑1 (MQ=255) tgctgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTTCCGGACACCCCGATAAAACACCCGCGCCCTCGGGTTCAAT‑ACCCCCCCAcccccccggaaacc > 1:1348448/1‑230 (MQ=255) tgctgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTCCCGCACGCCCCGCTAAATCAACCGCG‑CCTGCGGGTCAATCACCACCCCACCCCCCCGCAACCa > 1:1705604/1‑238 (MQ=255) tgctgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCTGCTGCCACCCCTGATAAATACCCCGCG‑CCCGCGGGTCAATCAACAACCCACCCCCCGGCAAccc > 2:311881/1‑237 (MQ=255) tgctgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAAACATCCCCCTGCACCCCCCGCTTAATTCACTCCC‑CCTGCGGTTCCACCACCACCCCCCCCCCCGCTAACCa > 1:2025478/1‑238 (MQ=255) ctgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAAACTCCTGCTGCACGCCCCCCTAAATCACACGCC‑CCCTCGGGTTCATCACCCCCCCACCCCCCCGGAAacaccg > 2:655605/1‑237 (MQ=255) tgcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATACTGCTGGCCGCCCTGACAAAACACCCGAG‑CCTGCGGGTCAATCACCACACCCCTCCCCGGCAAACACTgc > 2:1610953/1‑238 (MQ=255) gcCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATAAACCTTCTGGACGCCCTCGCCAATCACCCACC‑CCTGCGGGTCAATCACCCCCCCACACCCCCGCAACCAcatat > 2:1754542/1‑235 (MQ=255) aTCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCTTTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCCCCCTGCGATTGTGACCCGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATAcc < 1:1051480/239‑1 (MQ=255) ttCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCg < 1:311881/239‑1 (MQ=255) cGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGa < 1:1754542/239‑1 (MQ=255) gATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTCCGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTc < 1:477587/220‑1 (MQ=255) gtaaaaataatTCAGTTCTAATGTTGGTATGACATGAACAGCGGTCCGCCTTTCGCTGTGTACACCCAGCCGCGTCTGAATATCATCCCCCTGCGATTGTGACCCGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCcgacg < 2:741296/234‑1 (MQ=255) gATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAACCCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg < 1:1358466/239‑1 (MQ=255) gATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg < 1:1830862/239‑1 (MQ=255) gATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg < 1:511773/239‑1 (MQ=255) aatTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATCCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCGGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCTGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTaa < 1:820904/239‑1 (MQ=255) tCAGATTTAATGTTGGTATGACATGAACAGCGGTCCGCCATTCGCTGTGTAACCCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg < 1:148486/230‑1 (MQ=255) ggTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACCCCCTGCTAAATCACCCGCG‑CCTGCGGGTCAATCACCACACCACCCCCCGGGAACCACCGATACCCCCCCCCCCGCGAGGCGATAATCCCCCACCAGTGGTAATGATCTGTGCCctct > 1:289449/1‑237 (MQ=255) aCATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCCCCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGtt < 1:2078719/238‑1 (MQ=255) tGAACAGCGGTACGCCATTCGCGGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTACCCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGa < 1:272895/239‑1 (MQ=255) ggaccggCGGTCCGCCGTTCGCTGTGTAAACCCACCGGCGTTGGAATATCACCCCCCTGCGATTGTGACACGCGCGCACGGTTGGCGGCGTTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGa < 2:1943563/233‑1 (MQ=255) agagcccggCCATTCGTGGTGAAACCCCAGCCGCTTTTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCCCGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCCCGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAAcat < 2:1585141/231‑1 (MQ=255) cGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTCCAACCATCCTCCGGTACGCCCCCGTAAATCACCCCCG‑CCTCCGGTTCACACACCCCACCACACCCCCCGTACCACAGATAACCCGCCTCCCCCGAGCCGATAAACCCCCCCCAGTGGTAACGACCTCTGCCCTCTTCTTGTTCAGACAcacca > 2:1202842/1‑239 (MQ=255) cGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAAACCTCCTTCCGCCCCCCCCGATAAAATACCCCCG‑CCTGCGGGTCCAACACCCCACCACCCCCCCCTAACCCCCGATACCCCCCCCCCAACGCGGCGGCAAACCCCCGCGACTGGGGATGTACGTTGCCCTCTCCTTCTTCCGGAAcatc > 2:2078719/1‑238 (MQ=255) ggTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCCCCACACCCCGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAAcat < 1:2002129/236‑1 (MQ=255) ttCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCCGCTGCCCGCCCCGAGAAATCACCTCCG‑CCTCCGGGGCAATCACCCCACCCCCCCCCGGGAACCACTTATACCCCCCCCCCCGCGCGGCGATAATCCCCCCCGAGTGGGGAAGAAATGGGCCACCTTCTTTTTCTGGAACATCATTGCCaaaac > 2:1134931/1‑237 (MQ=255) tgtgTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGAAAAAACCTCCTGTTGCCCCCCCCGATAAAACAACCTCC‑CCCCCGGGTCAAACCCCACCCCCCGCCCCCGCGACCCCTGATACCCCGCCCCCACCGACGCGCTAAACCCCGCCGAGTGGTAATACACTGGGCCCCCTTCTCTTTCGGTAACATCATTTCTacaaccccc > 2:1620017/1‑230 (MQ=255) tgtAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCTGCTGCACGCCCTGATAAATCACCCGCG‑CCTGCGGGTCAATCACCACACCACGCCCCCGGAACCACTGATACCCCGCCTCCAGCGAGGCGACAATCCCCGACGAGTGGGAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTaaa > 1:1585141/1‑230 (MQ=255) cgcgTCTGAATATCATCACCCTGCGATTGTGACACGCGCGACCGGTTAGCGGCGGTAAAATCATCCTGCTGCGCGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCCCCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGcagccag < 1:1134793/237‑1 (MQ=255) gTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTAt < 1:1526272/238‑1 (MQ=255) gAATATCAACACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCACCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATccagc < 1:1134931/239‑1 (MQ=255) atcatcACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGTTAAAATCATCCTGCTGCACGCCCGGATAAATCACCTCCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCcgacg < 1:1443571/158‑1 (MQ=255) ccttGCGATTGTGACACGCGCGCTCGGGTAGCGGCGTTAAAACCACCCCGCTCCACGCCTTGTTAAACCCCCTACT‑CCGGCGGTTCAATCCCCACACCCCGCCCGGGTAACCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTg < 2:1705604/236‑1 (MQ=255) cccTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAATTCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTg < 1:1620017/239‑1 (MQ=255) cccTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTg < 1:1594762/239‑1 (MQ=255) cccTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATAATCCTGCTTCACGCCCCGATAAATCACCCCCG‑CCTGCGGTTCAATCACCACACCACGCCCCCGTAACCACCGATACCCCGCCCCCAGCGAGGCCATAATACCCGACGAGTGGGAATGATCTGTGCCCTCCTCTTGTTTTGAAAAATCCTTGCTAAACCACCCGTATATCAGCCCGCTCTACAGCCACGCCCCtt > 2:1147712/1‑238 (MQ=255) cGATTGTGACACGCGCGCACGGTTAGCGGCTGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCGATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCt > 1:1768334/1‑236 (MQ=255) cGATTGTGACACGCGCGCACGGTTAGCGGCGGCAAAATCATTCCGCTGCACCCCCCGATAAAACACCTCCC‑CCCGCCGTTAAATCACCACCCCACCCCCCCGGAACCCCCGATACCCCCCCCCCCGCCAGGCGAAAACACCCCACGAGTGGTGAAAATCCGGGCCCCCTTCCTTTACGGGAAAATCCCTGCTAAACCACACGCCATGCAGCCACCCATCCCGCCAAGcccccacctcct > 2:614282/1‑231 (MQ=255) gtgACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACGCCACGCCCCGGTAACCTCTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTa < 1:1520554/239‑1 (MQ=255) ccgcgcgCACGCTTGCGGGCGGTAAACTAACCCTGCTCCCCGCCCTGATAAACCCCCTGCG‑CCTGCGGTTCAATCACCACCCCCCGCCCCGGTACCCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTg < 2:289449/238‑1 (MQ=255) gcACGTTTGGCGGCGGTAGAATCATCCTGCTGCACGCCCTGATAACTCCCCTGCG‑CCTGCGGTCCAATCCCCACACCACGCCCCGGTAACCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGaaa < 1:540499/239‑1 (MQ=255) aCGTTTACCGGCCGTAAAATCATCCCGCTCCCCCCCCTGATAAATCACCTCGC‑CCTGCGGTTCACTCACCACCCCCCGCCCCGGTAACCCCTGATCCCCCGCCTCCAGCGAGGCGATATTCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAAcc < 1:1873505/239‑1 (MQ=255) aCGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAAcc < 1:88785/239‑1 (MQ=255) aCGGTTAGCGGCGGTAAAATCATCCTCCTGCCCGCCCTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGTTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAAc < 1:863716/238‑1 (MQ=255) ttAGGGCCGGTAAAATCATCCTGCTGCACGCCCTGATAAACCACCTGCG‑CCTGCGGTTCAATCACCACCCCACGCCCCGGTATCCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCt < 2:707329/239‑1 (MQ=255) cggTAAAATCATCCTGCTGCCCGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGt < 1:1347425/238‑1 (MQ=255) cccTGCGGCACGCCCGGATAAATCACCTGCG‑CCTGCGGTTCAACCACCCCACCACGCCCCGGTACCCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGc < 1:799215/238‑1 (MQ=255) cctcctGCACGCCCTGATAAATCCCCTGCG‑CCCGCGGTTCAATCCCCACCCCCCGCCCCGGTAACCACTGATCCCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCa < 1:2183200/239‑1 (MQ=255) ctgctgCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGCTAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGATTCTGAt > 1:2125066/1‑200 (MQ=255) ctgctgCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCAt > 1:1711554/1‑239 (MQ=255) tgcACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCCCCCCCCCACGCCCGGGTAACCGCTGATACGCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCGTCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAAcc < 1:101112/239‑1 (MQ=255) cGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTgg > 2:199748/1‑239 (MQ=255) cccTGATAAATCCCCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGtt < 1:655605/239‑1 (MQ=255) ccTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGt > 1:661466/1‑237 (MQ=255) ccTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGt > 1:488737/1‑237 (MQ=255) tGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGTTCTg > 1:649624/1‑239 (MQ=255) gATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg < 2:1904144/92‑1 (MQ=255) gATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAg > 1:1904144/1‑92 (MQ=255) | TTTTATTTCACCCCGTTGCTTCACCGCATCGTCACTGATAGTGCTGCCATCCTCTTCAATTTCCGTCGAATGGGGATCGTGATAATAATTCAGATCTAATGTTGGTATGACATGAACAGCGGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCG‑CCTGCGGTTCAATCACCACACCACGCCCCGGTAACCACTGATACCCCGCCTCCAGCGAGGCGATAATCCCCGACGAGTGGTAATGATCTGTGCCATCTTCTTGTTCGGAAACATCATTGCTAAACCACGCGTATTGCAGCCAGCTATCCAGCCAGGCCCCTTGCTTCTGATTACCGTGCTGAAACCAGCTTGATGTCAGCCCAACGGCATAACCGTGGTTCTG > NC_007779/2345207‑2345671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |