| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,485,352 | A→C | 23.6% | A590A (GCA→GCC) | ppc → | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,485,352 | 0 | A | C | 23.6% | 92.0 / 2.6 | 68 | A590A (GCA→GCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (8/36); new base C (5/13); total (15/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCGATG > NC_007779/3485114‑3485581 | tGAACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑Ca < 2:1724306/239‑1 (MQ=255)tGAACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑Ca < 1:819713/239‑1 (MQ=255) cGCCAACGATGTCATGACCCAGCTGCTCAATATTGTCTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTTC‑ATTTGTTCGCGG‑GGGG‑CAcccggg > 2:562756/1‑234 (MQ=255) cGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑C‑TTTGTGGCGGCGGCG‑CCCCCGcc > 1:1477969/1‑237 (MQ=255) cGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGCTTC‑A‑TTGGACTCGGGGGCG‑GACCCGcgc > 1:945712/1‑237 (MQ=255) aCGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGGTCC‑C‑CTGGTCGCGGCCGCG‑GCCCCGCTCCTgcg > 2:1031937/1‑239 (MQ=255) tGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATgcggcg < 1:545126/238‑1 (MQ=255) tGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATgcggcg < 1:183794/238‑1 (MQ=255) tGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATgcggcg < 1:2196947/238‑1 (MQ=255) tGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTAGTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATgcggcg < 2:1950197/238‑1 (MQ=255) gTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCg‑ct < 2:1443714/239‑1 (MQ=255) ccAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTcac < 1:346503/239‑1 (MQ=255) tCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGGTGGGGGGGCG‑GCCCCTCGCCTGCGGGG‑CGGCTGTCACaaaccccc > 1:1473312/1‑233 (MQ=255) aaTATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTAC‑C‑TTGGTCGCGGCGGGG‑CGCCTCCCCCGGCGGCG‑CTGCTTTCCCAAACC‑CCAgg > 1:1687025/1‑239 (MQ=255) atatTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGa < 1:677499/239‑1 (MQ=255) tatTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAACTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATg < 1:1840426/212‑1 (MQ=255) tGACTGGTATCGGGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGcc < 1:1744500/239‑1 (MQ=255) aCTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCGGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑ATGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTg > 1:705688/1‑239 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTTC‑A‑TTGGTTGCGGGGGCG‑GCCCTGCCCCGTGGGGG‑CCGCTGTCCCAACCC‑CCCGGAAGGCCGAAAg > 1:781170/1‑238 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑CTGGTCGCGGCGGCG‑CACCCGCTCCTTCGGCG‑CCGCCGTCCCCAACC‑CCCGGAAGACCGAAAgg > 1:1463568/1‑239 (MQ=255) tATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGGTCC‑C‑TTGGTTGCCGCGGCG‑CACCTGCTCATACCGCG‑CTGCTGTCACAACCG‑CCCCGGAGCCCCAAAgg > 1:1773424/1‑239 (MQ=255) ttggTGGCCTGATTCAGGGCAACAAGAGGGTGATTATTGGTTATCCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGAAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCCCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAggc < 2:1842435/236‑1 (MQ=255) gggccgtaTTCAGGGGAAAAAGATGGGGATGATTGGCTATTCCGACTCAGCAAAAGATGGGGGAGTGAGGGCAGCTTCCGGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGGGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAggcggc < 2:1730556/231‑1 (MQ=255) ccTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAGGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCACAGCCG‑CCAgg < 1:1634614/219‑1 (MQ=255) cgaagacAGGGACAACGGGTGGTGAGGAGTGGCTACTCCGACTAAGAAAAAGGGGAGGGGATGATCGCAGCTTCCTGGGTGCAATAG‑CAGGCACTGGAGTCATTAATCAAAACCTGCGAAAGAGGGGGTATGGCGCTTACGTGGTTCCACGGGCGCGGCGGTTCC‑A‑TTGGCGGCGGCGGCG‑CGCCGGCTAAGGCGGCG‑CGGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTgcg < 2:1266251/233‑1 (MQ=255) tGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGCTCC‑A‑TTGGGCGCGGCGGCG‑CACCCGCTCCTGCTGCG‑CTGCCGGCCCAACCG‑CCCCGAAGGCCGAAAAGAGGCCCgcgc > 1:2004816/1‑239 (MQ=255) tGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTACGAAAAAGCGGGTATTGAGCTGACGCTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTTGGGGCGGCG‑GCCCTGCTCATTCGGCG‑CGGCTGTCGCAAACGCCCGGGAGGCCGGAAAGG‑GGGCTgcgc > 1:1748586/1‑239 (MQ=255) gATTCATGGCACACGGTTGGTGATGTTTGGCTATTCCGACTCGGCAAAAGATGCGGGAGTGAGGGCAGCTTCCTGGGCGCAATAT‑CGGGCACGGGATGCATTAACCAAACCCTGCGAAAAAGCGGGTATTGCGCTGACGTTTTTCCCCGGTGGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CGCCTGCTCATGCGGGG‑CTGCTTTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGcgc‑g < 2:48834/239‑1 (MQ=255) tGGTGATGATTGGCTATTCCAACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCAAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTCCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAggg < 1:523011/235‑1 (MQ=255) tgatTGTCTATGCCGACTCAGCAAAAGATGGGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAgatgat < 1:1031937/238‑1 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATc < 1:1595144/239‑1 (MQ=255) taatgggCTATCCCGACTCAGCAAAAGAGGCGGGGTGGAGGGCAGCTTCCGGGGCGAAATAT‑CAGGAACAGGATGCATTAATCAAAACCTGGGAAAAGGGGGGTATGGAGCTGACGTTGTCCCCCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCAGGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAgatgat < 2:1748304/233‑1 (MQ=255) ggatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAgatgat < 1:807568/237‑1 (MQ=255) ttGGCTATTCCGACGCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCGCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCCCAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGc < 1:1409928/239‑1 (MQ=255) tGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCt < 1:1439322/239‑1 (MQ=255) ggCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCTCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCGGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCtt < 1:1513238/239‑1 (MQ=255) ttCCGACTCAGCAAAAGATGCGGGAGTGATGCCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATc < 1:461202/229‑1 (MQ=255) ctaaGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGt < 1:114181/235‑1 (MQ=255) cAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑C‑TTGGTTGCGGGGGCG‑CGCCCCCCCACTCGGGGCCCGCCG‑CACAACCG‑CCCGGAAGCCCGGAAGGGGGCCCGCCCGGTAACC‑AACAGGGCGCGAAGAGCCCCTTTAAAAAAGATCTGcac > 2:2094055/1‑237 (MQ=255) aaaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGcc < 1:1848723/237‑1 (MQ=255) aaaggggggAGTGGTGGCAGCTCCCTGGGCGCAAAAT‑CAGGCACGGGATGCATAAATCAAACCCTGCGAAAAGGCGGGTATTGAGCGGGCGTTGTCCCACGGTGGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAGCCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGaaa < 2:661885/233‑1 (MQ=255) ggATGGGAGCGTCCGGGGTGCAATAT‑CAGGCACAGCATGCATGAATCAAACCCTGCGAAAAAGGGGGTGGAGACCGAAGGTGGGTCCCGGGGCGCGGGGGTTCC‑A‑GTGGGCGGGGCGGCG‑ACCCTGCGCATCTGGGG‑CGGCTGCGACGGCCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGAGCCGCTTTAAATATGGTCTGCCAGAAATCACCGTaag < 2:505923/237‑1 (MQ=255) cgATGGCAGCTTCTTGGG‑GGGATATGCGGGCCAGGGATGATTTAACAAAACCCTGGGAAAAGGCGGGTATTGGGCTGCGGTTGTCCCCCGGGGGCGGCGGTTCA‑A‑TTGG‑CGCGGGGGGGCCACCGGTCCAGGCGGGG‑TGGCTGTAACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTcag < 2:85262/237‑1 (MQ=255) ggttgcgtGGGCACAATTT‑CAGGCCCAGGTGGCATTAATCAAAACCTGCGAAAAGGGGGGTATGGGGTGGACGTTGTCCACCGGCGGCGGCGGTCCC‑A‑TTGGCGGCGGCGGCG‑CACCTGCCCTGGCGGCG‑TTGTTGGCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTg < 2:151227/231‑1 (MQ=255) aGCTTCCTGGGGACATTAT‑CAGCACCAGAATTCATTAATCAAAACCTGGGAAAAGTGGGGTATTGGGCTGACTTTGTTCCACGGGCGCGGCGTTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCGCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTg < 2:1882016/238‑1 (MQ=255) aGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAGGCGGGTATTGAGCGGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTg < 1:562756/238‑1 (MQ=255) aGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTg < 1:1395817/238‑1 (MQ=255) tCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATGGTGCTGACGTTGTTCCCCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCt < 1:1701596/239‑1 (MQ=255) cgcAATAT‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATAc < 1:1641143/238‑1 (MQ=255) atat‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGGGGGTATGGAGCTGCCGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCgggg < 1:2048986/239‑1 (MQ=255) atat‑AAGGCACAGGATGAATTAATCAAACCCGGCGAAAAAGGGGGTTTTGAGCTGCCGTTTTTCCCGGTTCGCGGGGGTCCC‑G‑TTGGTCGGGGGGGCG‑CCCCTGCTCATGGGGCG‑CGGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCgggg < 2:1473312/239‑1 (MQ=255) tat‑CAGGCACAGGATGCATTAATCAAACCCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGt < 1:1396312/223‑1 (MQ=255) at‑CGGGCACGGGATGCATTAATCAAAACCTGCGAAAAGGCGGGTTTTGGGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCAGGCGGCG‑TTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCg < 2:771649/239‑1 (MQ=255) acaGGATGGATTAACCAAAACCGGCGAAAAAGCGGGTATTGAGTTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCAGGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTg < 1:1467950/238‑1 (MQ=255) cATTAATCAAAACCTGCGAAAAGGGGGGTATTGAGCTGCCGTTGTTCCACGGGCGCGGCGGTTCC‑A‑TGGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGt < 1:135772/207‑1 (MQ=255) cATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTc < 1:226692/180‑1 (MQ=255) gAAAAGGGGGGTTTTGGGTTGCCGTTGTTCCCCGGTCGCGGCGTTTCC‑A‑TTGGGCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGGTGTCCCAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCgg < 1:1537599/238‑1 (MQ=255) tGACGTTGTTCCGCGGTCGCGGCGTTTCC‑A‑TTGGCCGCGGCGGCG‑CCCCTGCTCAGGCGGCG‑CTGCTGTCACACCCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCg < 1:308407/238‑1 (MQ=255) tGACGTTGTTCCCCGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCCCAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGt < 1:1841216/239‑1 (MQ=255) tGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCg < 1:414896/238‑1 (MQ=255) tGACGTTGTCCCGCGGTCGCGGCGGTCCC‑A‑TGGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CAAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGt < 1:659063/239‑1 (MQ=255) ggccgtgtttCCACGGCCCGGGCGGTCCC‑A‑TGGGACGCGGCGGCG‑CCCCTGCTCATGGGGCG‑CTGCTGCCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCg < 1:1706601/230‑1 (MQ=255) gttCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CCCCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTa < 1:58833/239‑1 (MQ=255) ggggggggcgTTCCAA‑TTGGTCGGGCGGGCG‑CACGTGCCCAGGCGGCT‑GCGCTGGCACACCCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATg < 2:1748586/229‑1 (MQ=255) gTCGGGGCGTTTCC‑A‑TGGGGGGGGGCGGCG‑CCCCGGCTCAGGGGGGG‑CGGCTGCACCACCCG‑CAAGGAAGCCGGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGAt < 2:705688/236‑1 (MQ=255) gctggggggTTCC‑T‑TTGGTCGAGGCGGCG‑CTCCGGCTCTTGCGGCA‑CGCCTGCCAAAACCG‑CCAGGAAGCCTGAAAGGCGGCCGCCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGaa < 2:1947097/231‑1 (MQ=255) tggcggcggcgcct‑CTCCTGCCAGTGCGGCG‑TTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCt < 1:1907260/234‑1 (MQ=255) cggggcggcg‑CCCCTGCTCAGGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCg < 1:1380663/235‑1 (MQ=255) cgctGCGGCG‑CACCTGCTCAAGCGGCG‑CGGCTGTCACAACCT‑CCAGGAAGCCTGAAAGGCGGCCTGCTC‑GTAACCGAACAGGGCGAGATGATCCGCTGTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGACAGAGAGCTGGCGTCGCATTATGGATGAACTGACAGTCAACTCCTGCGa > 2:1808381/1‑239 (MQ=255) cggcggcg‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGCGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCGATg > 2:643541/1‑239 (MQ=255) | TGAACAACGCCAACGATGTCATGACCCAGCTGCTCAATATTGACTGGTATCGTGGCCTGATTCAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATAT‑CAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTCCACGGTCGCGGCGGTTCC‑A‑TTGGTCGCGGCGGCG‑CACCTGCTCATGCGGCG‑CTGCTGTCACAACCG‑CCAGGAAGCCTGAAAGGCGGCCTGCGC‑GTAACCGAACAGGGCGAGATGATCCGCTTTAAATATGGTCTGCCAGAAATCACCGTCAGCAGCCTGTCGCTTTATACCGGGGCGATTCTGGAAGCCAACCTGCTGCCACCGCCGGAGCCGAAAGAGAGCTGGCGTCGCATTATGGATGAACTGTCAGTCATCTCCTGCGATG > NC_007779/3485114‑3485581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |