BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_007779	344,526	C→A	16.4%	intergenic (+311/‑102)	Y75_RS01685 → / → Y75_RS01690	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779	344,526	0	C	A	16.4%	476.8 / 28.1	170	intergenic (+311/‑102)	Y75_RS01685/Y75_RS01690	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (108/33); new base A (2/27); total (110/60)
Fisher's exact test for biased strand distribution p-value = 1.25e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 174 total aligned reads displayed.

TGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGG  >  NC_007779/344288‑344761

 gtatatctgtatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACa                                                                                                                                                                                                                                             >  1:1444526/1‑239 (MQ=255)

 gtatatctgtatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACa                                                                                                                                                                                                                                             >  2:1371391/1‑239 (MQ=255)

  tatatctgtatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAg                                                                                                                                                                                                                                            >  2:39347/1‑239 (MQ=255)

  tatatctgtatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAg                                                                                                                                                                                                                                            >  2:1890091/1‑239 (MQ=255)

       ttgtatGGCAACGGGCATTCCGTATTTTTGTTCCCCGATTTTTTGTTGTGACCGGCGACACTTCGCTTGAAAAAGCACCAGTAGTGGTTTCGCAGCCTTGCGGTGTATAAAAAATGATCTCATGCAGATGTTTAGTGAATGTGTTG‑G‑TTGACG‑TTCATATGAAAAAAAGC‑ATAATC‑CCAGCATGTTTGTGTTTGG‑TATTTTCTATA‑TCTTACGCATCACCCTCAAGCCTCACAGAAAat                                                                                                                                                                                                                                       <  2:1315768/238‑1 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  1:1214544/1‑238 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  1:267740/1‑238 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  1:518141/1‑238 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  2:1707384/1‑238 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  1:101727/1‑238 (MQ=255)

          tatGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAata                                                                                                                                                                                                                                      >  2:536446/1‑237 (MQ=255)

            tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  1:502735/1‑236 (MQ=255)

            tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCt                                                                                                                                                                                                                                  >  2:260909/1‑239 (MQ=255)

            tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCt                                                                                                                                                                                                                                  >  2:38810/1‑239 (MQ=255)

            tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGATGAGATCGGCGACACTTCGCTTAAAAAAGCTCCAGAAGTCGTTTAGCAGCCATGCGTCGCAAAAAAAATGAACTCATGCAGCTGTTTGGTGAATGTGTTG‑G‑TTGATA‑TACATATGAACAAAATA‑ATAATT‑CCATCTTGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATATCACTCAAGCCTGAAAGACAatct                                                                                                                                                                                                                                     >  2:1551172/1‑234 (MQ=255)

            tGCCAACTGGCATTCCATCTCTTTTTTCGCCGATACTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAatat                                                                                                                                                                                                                                     >  2:344480/1‑236 (MQ=255)

                 aCTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAata                                                                                                                                                                                                                                      >  2:1712871/1‑230 (MQ=255)

                 aCTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:69946/1‑239 (MQ=255)

                 aCTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:704688/1‑239 (MQ=255)

                 aCTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:595146/1‑239 (MQ=255)

                  cTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:774117/1‑238 (MQ=255)

                  cTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:314034/1‑238 (MQ=255)

                  cTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAg                                                                                                                                                                                                                            >  1:968768/1‑238 (MQ=255)

                    ggCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGAc                                                                                                                                                                                                                                              >  2:105918/1‑219 (MQ=255)

                      cATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTc                                                                                                                                                                                                                        <  2:51356/238‑1 (MQ=255)

                      cATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTc                                                                                                                                                                                                                        <  1:1118256/238‑1 (MQ=255)

                           cATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCa                                                                                                                                                                                                                  >  2:1076556/1‑239 (MQ=255)

                             tctcTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCatatacaa                                                                                                                                                                                                                >  2:772462/1‑235 (MQ=255)

                             tctcTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCaaa                                                                                                                                                                                                                >  1:28751/1‑239 (MQ=255)

                               tctTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCaaaa                                                                                                                                                                                                               >  1:176375/1‑238 (MQ=255)

                                   ttttCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCg                                                                                                                                                                                                           >  1:224281/1‑238 (MQ=255)

                                     ttCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCa                                                                                                                                                                                                        >  2:856531/1‑239 (MQ=255)

                                          cGATATTTTTTTGTGATCGGCGACACTTCGATAAAAAAAGCCCCAGTAGTGGTTTCGCAGCCATGCGGTTTAAAAAAAATGATCTCATGAAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTAATATGAAAAAAATC‑AAAATC‑CCATCATTTTTGTGGGGGG‑TTTTTTCTGTA‑TCTTACGCATCGCCCTCAACCCTGACAAAAAATATGCT‑GTAGGGCTCATATAAAAAACCGCCATTAGc                                                                                                                                                                                                   <  1:1686023/239‑1 (MQ=255)

                                                       tgATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCCGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAACATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAaga                                                                                                                                                                                       >  1:114530/1‑238 (MQ=255)

                                                         aTCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    >  2:491523/1‑239 (MQ=255)

                                                         aTCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    >  2:1102739/1‑239 (MQ=255)

                                                         aTCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    >  2:339048/1‑239 (MQ=255)

                                                         aTCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    >  1:1174959/1‑239 (MQ=255)

                                                         aTCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    >  2:1211804/1‑239 (MQ=255)

                                                          tCGGCGCCCCTTCGCTAAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGGGGTGTAAAAAAAATGATCTCATGAAGTGTTTTTGTGAATTTGTTG‑G‑TTGACA‑TTCTAATAAAAAAAATC‑AAAATC‑CCATCTGTTTTGTGTGGGT‑TTTTTTCTGTA‑TCTTACGCACCGCACAAAACCCTGACAAAAAATATGCT‑GTAAGGCTCATAGCAAAAACCGCCATTAGCTCATCAGGAAGAGCa                                                                                                                                                                                    <  1:1336919/238‑1 (MQ=255)

                                                               tacgtttCGATAAAAAAAGCCCGAGTTGTGTTTTCGGACACATGGGGTTAAAAAAAAATTATCAATTGAATTTTTTTTGTGAGTGTTTTG‑G‑TTGATA‑TTAATATAAAAAAAATC‑ATAATC‑CCATCATGTTTGGGGGGGT‑TTTTTTCTGTA‑TCTTCCGCATCACACCCACGCCTAAAAAAAAAGATGTT‑GAAAGCCTAATAACAAAACCCGCCATTAGCTCATCAGGAAGAGCAgacga                                                                                                                                                                               <  2:612488/233‑1 (MQ=255)

                                                                  actccgataaaaaaaCCACAAGTGGTGTTTGCGAAGCATGGCGGTAAATAAAAAAGGATCACATGAAGATGTTTTGTGAATG‑GTTG‑GTTTGAAA‑TTAATAAAAAAAAAATA‑ATAATC‑CAATCATTTTTGGGTGGTG‑TTTTTTCTTTA‑TCTAACCCATCGCACTCACGCCTGACAAAAAATATGCT‑GAAAGGCTCAAATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGGCGACAAc                                                                                                                                                                           <  1:126516/230‑1 (MQ=255)

                                                                        cTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAt                                                                                                                                                                     >  1:724654/1‑239 (MQ=255)

                                                                          aaaaaaaGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑T‑TTAACA‑TTCATATGAAAAAAATC‑ATAATC‑CCATCTTGTTTGTGTGGGG‑TTTTTTCTTTA‑TCTTACGCATCGCACGCAAGCCTGACAAAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttg                                                                                                                                                                   <  1:39347/238‑1 (MQ=255)

                                                                          aaaaaaaCCACCAGTAGTGTTTTCGCAGCCATGCGGTGTAAAAAAAATGATCTCATGAATATTTTTTGTAAATGTTTTG‑G‑TTAACT‑TTAATATGAAAAAAATC‑AAAATC‑CCATCTTGTTTGTGTGGGT‑TTTTTTCTGTA‑TCTTCCGCACCCCACTCAACCCTAAAAAAAAATATGCT‑GAAAGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttg                                                                                                                                                                   <  1:943136/238‑1 (MQ=255)

                                                                              aaaGCACAAGTAGTGGTTTCGCAGCCATGCGGTGTAAAAAAAATGATCTCATGCAGGTTTTTTGTGAATGTTTTG‑G‑TTGACA‑TTAATAAAAAAAAAATC‑AAAATC‑CCATCATTTTTGTGTGGGG‑TTTTTTCTGTA‑TCTTCCGCATCCCCCTCAACCCGGACAGAAAATATGCT‑GAAGGCCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATtgttgt                                                                                                                                                               <  1:526564/239‑1 (MQ=255)

                                                                               aggCACCTGTATGGTTTTCGCAGCCATGTGTTGAATAAAAAATGATCCAATGGAGATTTTTTGTG‑ATGTTTTG‑G‑TTAACATTTAATAAAAAAAAAATA‑ATAATC‑CCCTATTTTTTGTTTGTGT‑TTTTTTTTTTT‑TCTTACCCACCCCCCCCAGGCCTGAAAAAAATTGTGGT‑GAAAGCCACAAATAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTa                                                                                                                                                              <  2:1147423/237‑1 (MQ=255)

                                                                                      ggtgggggTTTCGCAGCCGTGGGGTTTAAAAAAAATGATCTCATGCAGTTGTTTTGTGAATGTGTTG‑T‑TGAACA‑TTAATATAAAAAAAATC‑ATATTC‑CCATAATGTTTGTGGGGGT‑TCTTTTCTTTT‑TCTTACGCATCGCACTCAACCTGGACAAAAAATATGTT‑GTAAGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACg                                                                                                                                                       <  1:772462/233‑1 (MQ=255)

                                                                                                  gCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAgg                                                                                                                                             >  1:1923979/1‑237 (MQ=255)

                                                                                                      ccATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGa                                                                                                                                       >  1:1244573/1‑239 (MQ=255)

                                                                                                              tgtATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCCTCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTACCTCATCAGGAAGAGCAGACGACAACCGGGATTGTTGTATGGTACGGCGGTCGAAGCCTAGATGGCCGt                                                                                                                                >  2:606110/1‑238 (MQ=255)

                                                                                                                            tctcATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTAACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaa                                                                                                                   >  1:1536599/1‑237 (MQ=255)

                                                                                                                                aTGCAGTTGTTTTGGGATTGTTTTT‑G‑TTGACA‑TATATAAAAAAAAAATA‑ATATTC‑CCATCATGTTGGGGTGGTT‑TTTTTTCTTTA‑TCTTACCACTCCCACACAAGCCAAAAAAAAAATATGCT‑GAAGGGCACATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtctt                                                                                                             <  2:176375/239‑1 (MQ=255)

                                                                                                                                          tttGTGATTGTTTTG‑G‑TTGATA‑TTAATATAAAAAAAATA‑ATATTC‑CCATCATGTTTGGGTGGGG‑TTTTTTCTGTA‑TCTTCCGCATCGCCCTCAAGCCTAAAAAAAAATATGCT‑GAAAGGCTCATACCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   <  1:856531/239‑1 (MQ=255)

                                                                                                                                          tttGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAACAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   >  1:1599747/1‑239 (MQ=255)

                                                                                                                                          tttGTGAATGTGTTG‑G‑TTGACA‑TTAAAAAAAAAAAAATA‑AAAATC‑CCATCATTTTGGTGTGGGT‑TTTTTTCTGTT‑TCTTACGCACCGCACTCAAGCCTAAAAAAAAATATGTT‑GAAGGGCTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   <  1:1257634/239‑1 (MQ=255)

                                                                                                                                          tgtgtgAATTTTTTG‑T‑TTTACT‑TACAAAAAAAAAAAATA‑ATAATT‑CATTTATGTTTGTGTGGGT‑TTTTTTCTGTA‑CCTTCCGAACCCCCCCCAGCCGAGACA‑AAAATTTGGTGGTAAGACTCAAATAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   <  2:502735/237‑1 (MQ=255)

                                                                                                                                           tttgtaaTGTGTTGTG‑TTTAAT‑TTCTAATAAAAAAAAT‑‑ATAATTCCCATTTGTTTTGTGTGGTG‑TTTTTTC‑GTATTTTTACGCATCACACCCAACCATGAAAAAAAAGAGGCT‑GTAGGTCAAAAAAAAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   <  2:1367472/234‑1 (MQ=255)

                                                                                                                                           ttGTGATTGTGTTG‑G‑TTGACA‑TTCATATAAAAAAAATC‑ATAATC‑CCATAATGTTTGTGTGGGG‑TTTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTAAAAAAAAATATGCT‑GAAAGGCTAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGAt                                                                                                  <  1:1406235/239‑1 (MQ=255)

                                                                                                                                           ttGTGAGTGTTTTG‑G‑TTGACA‑TTCATAT‑AAAAAAATCAATAATC‑CCTTCTTGTTTGTGGGGGT‑TTTTTTTTGTA‑TCTTCCCCCTCGCCCTAAGCCCGGAAAAAAAATATGTT‑GAAAGCCTAAAATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGAt                                                                                                  <  1:1081668/239‑1 (MQ=255)

                                                                                                                                           ttGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                                                                                   >  1:882716/1‑238 (MQ=255)

                                                                                                                                                         tgtttgATA‑TTTATATGAAAAAAATA‑ATATCT‑CAAACAGGTTTTTGTGGGT‑TTTTTTCTTTT‑TATTACCCACCGCCCCAACCCCAGACAAAAAATATGCT‑GAAAGACAAATACAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTtattat                                                                                       <  2:1677076/235‑1 (MQ=255)

                                                                                                                                                              gACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatcatc                                                                                   >  1:252898/1‑237 (MQ=255)

                                                                                                                                                                cA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCt                                                                                >  1:1831814/1‑238 (MQ=255)

                                                                                                                                                                cA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCt                                                                                >  1:536870/1‑238 (MQ=255)

                                                                                                                                                                cA‑TTAATAAAAAAAAAATC‑ATAATC‑CCATCATGTTGGTGTGGGT‑TTTTTTCTGTT‑TCTTCCGCATCGCACTCAGGCCTGAAAAAAAATATGCT‑GAAAGCTTAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTg                                                                               <  1:1616903/239‑1 (MQ=255)

                                                                                                                                                                      atatGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAg                                                                          >  1:1946567/1‑239 (MQ=255)

                                                                                                                                                                      atatGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAg                                                                          >  2:1036687/1‑239 (MQ=255)

                                                                                                                                                                      atatAAAAAAAATC‑ATAATC‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACCCAGGCCGGACAAAAAATATGCT‑GTAAGGCTAATAACAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAg                                                                          <  1:412081/239‑1 (MQ=255)

                                                                                                                                                                           aaaaaaaTC‑ATAATT‑CCATCATGTTTGTGGGGGT‑TTTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCAGAAAAAAAATATGCT‑GAAAGGCTCATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGaa                                                                     <  1:1241159/239‑1 (MQ=255)

                                                                                                                                                                            aaaaaaTC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAAc                                                                    >  1:1163263/1‑239 (MQ=255)

                                                                                                                                                                                             aattttGTTTGGGGGGGT‑TCTTTTCTTTA‑TCTTCCCCACCGCCACCAAGCGTAAAAAAAAATGTGTG‑GTAAGCATAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTgg                                                     <  2:860366/234‑1 (MQ=255)

                                                                                                                                                                                                   ttttGTGGGGGGTTTTTTTCTGTA‑TCTTACGCCCCGCACCCAACCCAAAAAAAAAATATGCT‑GAAAGGCTAAAAAAAAAACCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTAtt                                                <  1:999252/238‑1 (MQ=255)

                                                                                                                                                                                                    tttGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCa                                              >  2:749066/1‑239 (MQ=255)

                                                                                                                                                                                                      tgtgtgGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAgg                                                                                                                                             >  1:487925/1‑142 (MQ=255)

                                                                                                                                                                                                      tgtgtgGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAgg                                            >  1:1308540/1‑239 (MQ=255)

                                                                                                                                                                                                       gtgtgGGG‑TTTTTTCTGTA‑TCTTACGCATCCCACTCAACCCTAACAAAAAATATGCT‑GAAAGCCACATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa                                           <  1:1014347/239‑1 (MQ=255)

                                                                                                                                                                                                       gtgtgGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAACACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa                                           >  2:1438710/1‑239 (MQ=255)

                                                                                                                                                                                                       gtgggGGG‑TTTTTTCTTTA‑TCTTACGCTCCGCACTAAAGCCTGACAAAAAATATGCT‑ATAAGGCTAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa                                           <  1:344480/239‑1 (MQ=255)

                                                                                                                                                                                                        tgtgGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGAt                                          >  1:1164784/1‑239 (MQ=255)

                                                                                                                                                                                                         tgtgatttCTTTTGTGTA‑TTTTCCGCACCGCACTCAAGAATGAAAAAAAATGTGCT‑GTAAGGATAATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGa                                           <  1:1551172/231‑1 (MQ=255)

                                                                                                                                                                                                            ggg‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATggg                                       >  1:1718880/1‑238 (MQ=255)

                                                                                                                                                                                                            ggg‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCCTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATggg                                       >  2:1422750/1‑238 (MQ=255)

                                                                                                                                                                                                             gg‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGTTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGCATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCACCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGc                                     >  2:272875/1‑239 (MQ=255)

                                                                                                                                                                                                                    ttCTGTA‑TCTGACGCATCGCCCACAAGCCTGAAAGAAAATATGCT‑GTAAGGCTCATATAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCa                               <  1:1778303/239‑1 (MQ=255)

                                                                                                                                                                                                                          a‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAt                                                                                                                                                                     >  1:384857/1‑99 (MQ=255)

                                                                                                                                                                                                                               tACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCttatta                                                                                        >  1:1073799/1‑172 (MQ=255)

                                                                                                                                                                                                                               tACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGaaaaaa                      >  2:1554687/1‑238 (MQ=255)

                                                                                                                                                                                                                               tACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGaaaaaa                      >  1:193436/1‑238 (MQ=255)

                                                                                                                                                                                                                               tACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGaaaaaa                      >  2:39913/1‑238 (MQ=255)

                                                                                                                                                                                                                               tACGCATCGCACTCAAGACTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACAAATGaaaaaa                      >  2:462647/1‑238 (MQ=255)

                                                                                                                                                                                                                                 cGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGc                    >  1:1478665/1‑238 (MQ=255)

                                                                                                                                                                                                                                  gCATCGCACTCAAGCCTGAAAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGccc                  <  1:330018/239‑1 (MQ=255)

                                                                                                                                                                                                                                     accaaCTCAAGCTTAACAGAAATTATAGT‑GAAAGACTAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcaca               <  2:985541/235‑1 (MQ=255)

                                                                                                                                                                                                                                      cGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcacac              >  1:1350270/1‑239 (MQ=255)

                                                                                                                                                                                                                                      cGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCcacac              >  2:902731/1‑239 (MQ=255)

                                                                                                                                                                                                                                         accagacccTGAAAGAAAATATGCT‑TAAACGCACATATAAAAAGCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAgg           <  2:1149254/232‑1 (MQ=255)

                                                                                                                                                                                                                                            cAACCCTGACAAAAAATATCCT‑GAAAGCATAATAAAAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGga        <  1:933209/239‑1 (MQ=255)

                                                                                                                                                                                                                                                ccTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGt    >  1:1057177/1‑239 (MQ=255)

                                                                                                                                                                                                                                                   gACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGAc                                 >  1:264266/1‑207 (MQ=255)

TGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTG‑G‑TTGACA‑TTCATATGAAAAAAATC‑ATAATT‑CCATCATGTTTGTGTGGGG‑TCTTTTCTGTA‑TCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCT‑GTAAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTGCCATTGTTTGGCTATTCAGGATGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGG  >  NC_007779/344288‑344761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`