Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 3,252,124 G→A 100% V249V (GTC→GTT)  Y75_RS16165 ← DNA‑binding transcriptional regulator YhaJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077793,252,1240GA100.0% 208.7 / NA 58V249V (GTC→GTT) Y75_RS16165DNA‑binding transcriptional regulator YhaJ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (46/12);  total (46/12)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TACGGAAACGATCCGAAGTTTGGTTCAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCGACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGACGTTCA  >  NC_007779/3251891‑3252359
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           
tACGGAACCGATCCTAATTTTGGTTCAAATTAATCTTAGAATTGGGTCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCa                                                                                                                                                                                                                                         <  2:1581101/238‑1 (MQ=255)
     aaaCGATCCGAAGTTTGGTTCAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGa                                                                                                                                                                                                                                    <  1:886145/238‑1 (MQ=255)
      aaCGATCCGAAGTTTGGTTCAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGAt                                                                                                                                                                                                                                   >  1:322289/1‑238 (MQ=255)
                    tGGTTCAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTcgcc                                                                                                                                                                                                                     >  1:128759/1‑238 (MQ=255)
                         cAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTcgccacgcca                                                                                                                                                                                                               >  1:793327/1‑239 (MQ=255)
                                 tCTTGGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTCCCCCAATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGc                                                                                                                                                                                                       <  1:967698/239‑1 (MQ=255)
                                 tCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCg                                                                                                                                                                                                        >  1:591527/1‑238 (MQ=255)
                                                            ttttttATAAAAAATAATAATAATTTTTTTCGTACAAAATGTTGGGGAATTCCCCGCAGACACCAGGTTTCCTCCCCCCTCATACTCCCACGACCCCAGCCAAAAATATTTTCTCTCTCGTGGTTCGTTCCCGGGCGGACGACACCCACCCGCCCTCCCGAAATTTTTTTTAAAACAATAGGAGATGGTACCGCCCCCCCCCCAGGCCCCGCCAGTAATGCCTGACGTTTATCTTCAAt                                                                                                                                                                            <  2:1724076/238‑1 (MQ=255)
                                                             tttttATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATc                                                                                                                                                                           >  1:444898/1‑239 (MQ=255)
                                                                      aCAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCAcc                                                                                                                                                                  >  1:520495/1‑239 (MQ=255)
                                                                      aCAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCAc                                                                                                                                                                   >  1:1724076/1‑238 (MQ=255)
                                                                                atttttttttCCGTAAAAAATTTTGGGAATTCCCCCAAGACACCAGGTTTTCCCTCCCCCCACACTGCCCCGCCGCCAGCCCAAAATAATACCGATCCCGCTGGTCGTTCCCGGGCTGACAACCCGCACCCCCCCTTCCGCAATATCTTTTTCAACCATAGAATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGcgcg                                                                                                                                                        <  2:520495/233‑1 (MQ=255)
                                                                                  attattTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGcgcg                                                                                                                                                        >  2:1190123/1‑237 (MQ=255)
                                                                                  attattTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGcgcg                                                                                                                                                        >  1:295315/1‑237 (MQ=255)
                                                                                    tattTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGcgcg                                                                                                                                                        >  1:1738373/1‑235 (MQ=255)
                                                                                    tattTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGACATCATAATATCGATCTCGCTCGTCGATTCCGGGCTGACGACACGAAACCGCCCTTCCGTAATCACTTTTTCACCCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAACGCCAGTCTTTTATATTCAATCGTCGTCACCGTCAAGCGCGGCTg                                                                                                                                                    >  2:619132/1‑239 (MQ=255)
                                                                                         tCCGTTAAACAGTTTGGAAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGCGCTGACGACACGCAACCGCCCTTCCGCAATATCTTCTTCAACCATAGGATCCGGCATCGTCGCCACGCCAAGCCCCGCCCGTAATGCCGGACGTTGATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGCTTg                                                                                                                                                >  2:1640671/1‑238 (MQ=255)
                                                                                         tCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTg                                                                                                                                                >  2:480582/1‑238 (MQ=255)
                                                                                           cGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTcc                                                                                                                                             >  1:1909691/1‑239 (MQ=255)
                                                                                             ttAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCca                                                                                                                                            >  1:560323/1‑238 (MQ=255)
                                                                                                aaaaGTTGGGAAATTCCCCGCAACCCCCAGTTTTCCGCTCCCCCAATCCTGCCGCGCCCCAAGACCATAATATTACCGACCTCGCTGTTCGACTCCGGGCGGCCGCCCCGCACCCGCCCTCCCGCAATTTCTTTTACAACCATAGGATACGGCTTCGTCGCCCCGCCCAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCcagcag                                                                                                                                        <  2:322289/239‑1 (MQ=255)
                                                                                                       tGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACg                                                                                                                                 >  1:310241/1‑239 (MQ=255)
                                                                                                                                 ttCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAaca                                                                                                                          >  1:461692/1‑220 (MQ=255)
                                                                                                                                     cTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATcc                                                                                                   >  1:1171496/1‑239 (MQ=255)
                                                                                                                                                   tCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTcc                                                                                     >  1:1499589/1‑239 (MQ=255)
                                                                                                                                                   tCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTc                                                                                      >  2:1922530/1‑238 (MQ=255)
                                                                                                                                                   tCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTAGCCGCCACCGCAATTcc                                                                                     >  2:805709/1‑239 (MQ=255)
                                                                                                                                                   tCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGACCTTCCGCAATATCTTTTTCAACCATAGGATACCGCATCCTCGCCACGCCAAGCCCCGCCAGTAATCCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGACCAGCAGCTGTACGGTCCACACCGGGCGCTCACGACCGGTATCCGCCACGGCAATTc                                                                                      >  2:331492/1‑238 (MQ=255)
                                                                                                                                                     acgacgCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCAc                                                                                   >  2:1022871/1‑239 (MQ=255)
                                                                                                                                                     acgacgCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCAc                                                                                   >  1:1151126/1‑239 (MQ=255)
                                                                                                                                                     acgacgCCAGGCCATAATAATATCGATCTCGCTGGACGATTCGGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATTGTCCCTACGCCAAGTCTCGCCCGGAATGCCTGACGTTTATCTTCAATCGCGCGCACCCTTAAGCGCGGCTGTTGGTCCAGAAGCCGTACGGTCAACACCGGGCGTCCAAGTACGGTATACGCAGACGAAATTCCa                                                                                    >  2:1296798/1‑238 (MQ=255)
                                                                                                                                                     acgacgCCAGGCCATAATAATATCGATCGCGCTGGTCGATTCCGGGCGGGCGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCACCGCCAGTAATGCCTGACGTTTATCTTCAATCGGGCTCACCGTTAAGCGCGGCGGATGGTACAGCAGCTGTACGGTCAACACCGCGCGCTCACGAGAGGTATCCGCCACCGCAATTCCAc                                                                                   >  2:73608/1‑239 (MQ=255)
                                                                                                                                                        acgCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGat                                                                                >  1:609245/1‑239 (MQ=255)
                                                                                                                                                                         tatCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATa                                                                                                                                                                                                                                       <  1:1027504/71‑1 (MQ=255)
                                                                                                                                                                         tatCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATa                                                                                                                                                                                                                                       >  2:1027504/1‑71 (MQ=255)
                                                                                                                                                                         tatCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACt                                                               >  2:592430/1‑239 (MQ=255)
                                                                                                                                                                           tCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTc                                                             >  1:302519/1‑239 (MQ=255)
                                                                                                                                                                           tCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTc                                                             >  2:1797453/1‑239 (MQ=255)
                                                                                                                                                                           tCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTc                                                             >  2:1081781/1‑239 (MQ=255)
                                                                                                                                                                           tCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTc                                                             >  1:1176650/1‑239 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAATCGCCCTTCCGCGATATCTTTCTCAACCATAGGCTACGGCATCGTCGCCACGCCACGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTTTACGTTCAACCCCGTGCGCTCACGAGCGGTATCCGCCATCGCCATTCCACGATATTTCACACGCGTCCCTTCa                                                            >  2:361317/1‑237 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGa                                                          >  1:831807/1‑239 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGa                                                          >  1:952891/1‑239 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGa                                                          >  1:1935850/1‑239 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGa                                                          >  1:1352573/1‑239 (MQ=255)
                                                                                                                                                                              aTCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGACATTTCACACGCGTCACTTCAGa                                                          >  2:1523420/1‑239 (MQ=255)
                                                                                                                                                                                       gTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACCTCAGATAACGGtt                                                  >  2:151284/1‑238 (MQ=255)
                                                                                                                                                                                                 ggCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAaca                                                                                                                          >  1:1544983/1‑156 (MQ=255)
                                                                                                                                                                                                 ggCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCtga                                       >  1:1571141/1‑239 (MQ=255)
                                                                                                                                                                                                     aacaccccGCACCCCCCCTTCCGAAATTTCTTTTCAAACAATAGGATCCGGCTTCGTGCCCCCGCCACGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCtgatga                                    <  1:453198/231‑1 (MQ=255)
                                                                                                                                                                                                      acgacACGCAACCGCCCTTCCGCAATATCTTTTTCAACCATAGGATACGGCGTCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGaa                                   >  1:243413/1‑238 (MQ=255)
                                                                                                                                                                                                                      cTTCCGCAATATCTTTTTCAACCAGAGGATCCGCCATCGTCGCCCCCCCAACCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGcgcg                  <  1:619132/239‑1 (MQ=255)
                                                                                                                                                                                                                               tatCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAg         >  2:1153284/1‑239 (MQ=255)
                                                                                                                                                                                                                                 tCTTTTTCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGAc       >  2:401761/1‑239 (MQ=255)
                                                                                                                                                                                                                                     tttCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGtcaccgttc   >  2:1078938/1‑231 (MQ=255)
                                                                                                                                                                                                                                      ttCAACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGACGTTCa  <  1:1190123/239‑1 (MQ=255)
                                                                                                                                                                                                                                      ttCAACCAGAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGACGTTCa  <  1:1081781/239‑1 (MQ=255)
                                                                                                                                                                                                                                      ttCAACCAAAGGATACGGCATCGCCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGACGTTCa  <  1:840587/239‑1 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                           
TACGGAAACGATCCGAAGTTTGGTTCAAATTAATCTTAGAATTGGGGCGATATTTCGCCCCTTTTTATTAACAATAATAAATATTATTTTCCGTTAAAAAGTTTGGGAATTTCCCGCAGACACCAGGATTTCGCTTCCCCCATACTGTCACGACGCCAGGCCATAATAATATCGATCTCGCTGGTCGATTCCGGGCTGACGACACGCAACCGCCCTTCCGCAATATCTTTTTCGACCATAGGATACGGCATCGTCGCCACGCCAAGCCCCGCCAGTAATGCCTGACGTTTATCTTCAATCGTGCTCACCGTTAAGCGCGGCTGTTTGTCCAGCAGCTGTACGGTCAACACCGGGCGCTCACGAGCGGTATCCGCCACCGCAATTCCACGATATTTCACACGCGTCACTTCAGATAACGGTTCCGGCTCCTGATGAATCGGGTGATCAGGCGCGGCAACGTAGACGTTCA  >  NC_007779/3251891‑3252359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑