| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,857,502 | T→G | 16.9% | V250G (GTG→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,857,502 | 0 | T | G | 16.9% | 144.4 / 5.4 | 76 | V250G (GTG→GGG) | gpsA | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (25/36); new base G (13/2); total (38/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.95e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTT > NC_007779/3857265‑3857733 | tgcACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTg < 1:1086026/239‑1 (MQ=255)tgcACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTg < 1:29153/239‑1 (MQ=255)tgcACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTg < 1:286881/239‑1 (MQ=255)tgcACTGCGGCAAAAGTTGCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCGTTGGTGCGGGGATGTCCGACGGTGTCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGGCCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTg < 2:1287069/239‑1 (MQ=255)gtcACTGCGGCAAAAGTGTCCGGGGTTACAGCAAGCCGGATTTCATTGGCGTGCAGCGTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTGGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCGCCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTg < 2:1729359/237‑1 (MQ=255) aCTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCtt < 1:881222/239‑1 (MQ=255) aCTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCt < 1:1909236/238‑1 (MQ=255) tGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGCGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGGTCT‑GGTGCTTa > 1:1822324/1‑238 (MQ=255) cGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGGTTGGCGGTCC‑GGGGCTTAccc > 2:881222/1‑238 (MQ=255) cGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGGTCT‑GGTGCTTa > 1:1849395/1‑236 (MQ=255) cGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGGTCT‑GGGGCttc > 1:267963/1‑235 (MQ=255) cGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGGGCTTa > 1:1640851/1‑236 (MQ=255) ggCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTg < 1:1042785/239‑1 (MQ=255) ggCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTg < 1:919406/239‑1 (MQ=255) ggCAAAAGTGTCCGAGTGTGCAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAA‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCt < 2:377529/238‑1 (MQ=255) cAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGGGCGGCGCTGGGTGCCGACCCTGCCCCCTTTAT‑GGGCCTGGCAGGTGTTGGGGGTCTGGGTGCTTCCCtct > 2:1732567/1‑237 (MQ=255) ttCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GAc < 1:823610/237‑1 (MQ=255) ttCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACaa < 1:193780/239‑1 (MQ=255) ttCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACa < 1:1199663/238‑1 (MQ=255) tCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAAc < 1:933876/239‑1 (MQ=255) aTCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGGGGTCT‑GGGGCTTACCCTTACC‑GACCACCAAGCGCGGAAccg > 1:1005237/1‑238 (MQ=255) tCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCCTGGGGATCT‑GGTGCTTACCTGTTCC‑GACAACCAGGCCCGTAAccgcc > 1:647208/1‑239 (MQ=255) aTTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCCTGGCGGTCT‑GGGGCTTACCTGGACC‑GACAAACAGACGCGTAAACGCC‑C‑GTTTGGCat > 1:553296/1‑239 (MQ=255) tGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGGGCTTACCTGTACC‑GACAAACAGTCGCGTAACCGCC‑G‑GTTTGGCATGATGCTCGGTCAgg > 1:135697/1‑239 (MQ=255) cggcgCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCCGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGGGCG‑TGGGCTTTCCCTTACCGGCCAACCGCTGGGGGACCCGCC‑G‑TTTTGGCGGGATGC‑CGGGCAgggga > 2:558120/1‑237 (MQ=255) ttGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAg > 1:165352/1‑239 (MQ=255) tGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GGCAACCAGTCGCGTAACCGCC‑G‑GTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGagaaga > 1:1521833/1‑239 (MQ=255) aTGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCCCCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCCCCTTTAT‑GGGCATGGCGGGGTTTGGCGTTCT‑GGTGCTTCCCTGTCCC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAgg < 1:425537/238‑1 (MQ=255) tCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCCTGGCGGTCT‑GGTGCCTTCCTCTACC‑GGCAACCAAGCCCGTAACCGCC‑G‑CTTTGGCCTGATTCCCGGGCAGGGGCAGGGTGGACAAAGCGCGCAAGGAAAGA‑TTGGGTAgggggt > 2:1898271/1‑239 (MQ=255) aCGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCGGGTGGTGGag > 1:506384/1‑238 (MQ=255) tCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGGGGTCT‑GGTGGCTACCTCTACC‑GACAAACCGTCGCCGAACCCCC‑GCTTTTGGC‑TGGTTGTCGGGACGGGCCTGGAGTTACAAAACGCGCCGGGGAAGA‑GTTGGCCGGTGGTGGaaaggca > 2:1805328/1‑233 (MQ=255) cGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGGGCTTACCTGTACC‑GACAACCAGTCGCGGAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAACGCGCAGGAGAAGA‑TTGGTCAGGTGGGGGGAGGCTAcc > 1:486106/1‑239 (MQ=255) tGCGAATGCGCGTACGGCGCTGATCCCCCGTGGGCTGGCGAAAAGGTCGCGTCTTGGTGCGGCGCGGGGTGCCGCCCCTGCCACCTTTAT‑GGGCAGGGCGGGGCTTGGCGATCT‑GGTGTTTACCTGTCCC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAggg < 1:270901/177‑1 (MQ=255) cgcgTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGGCTGGCGGTCT‑GGGGCTTACCTGTACC‑CGCAACCAGCCGCGGAACCGCC‑G‑GTTTTGCCTGTTGCTCGGTCAGGGCATGGCTGCACAAAGCGCGCCGGAGAAGA‑ATGGGCAGGCGGGGGAAGGCGACCGCAAAACGGaggaaag > 2:1060661/1‑236 (MQ=255) ggcgggcTGAGCACCGGGGGGCGGGCGAACAGGTCGCGTGTGGGGGGGGCGGTGGGGCCCACCCCTGCCACCTTAGG‑GGGACGGGGGGGGCTGGGCGGTTG‑GTTGCGTCCCGGGCCC‑GACACCGATGGGGGAAGCCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCcgcg < 2:1012683/233‑1 (MQ=255) cccccGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCCCCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAgcg < 1:499183/168‑1 (MQ=255) ggctggctGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCCGGTGGTGGAAGGCTACCg > 1:1752615/1‑199 (MQ=255) ctggctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCGTGGCGGTCT‑GGTGCTTTCCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCGTGATGCTCGGGCAGGGCATGGATGTGCAAAACCCGCCGGggaa > 2:499183/1‑170 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGGTTGGCGATCT‑GGGGCTTACCTCTACC‑GACAAACCGTCCCCCAACCGCC‑G‑TTTTGGGGTGGTGGTCGGTCAGGGCATGGGAGGAACAAGCGCGCAGGGGAAGA‑ATGGTCAGGTGGGGGGAGGCTAACGCAATACGGAAAAAGGCCGCGAACCGGCGCATCCCCTCGGCGTTgg > 2:1721723/1‑238 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGGGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGGCAGGGGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGa > 1:323408/1‑239 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCCTGGCGAGCT‑GGTGCTTACCTGTTCC‑CGCAACCAGCCGCGTAACCGCC‑C‑TTTTTGGCTGAGTCCCGGGCCGGGCATGGAGGTACCAAGCGCGCAGGAGAAGA‑GTGGTCAGGGTGGGGGAGGCGCCCGCCATAAGAAAAAAATCAGCGAACTGGCGCATCGCGTCTGCgcttg > 2:31494/1‑235 (MQ=255) tgaatgggcgcgTCTGGGTGCGGCGCGGGGGCCCGCCCCTGCCACTTTTAT‑GGGCAGGGGGGGGTTTGGCGTTCT‑GGTGCTTCCCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGaa < 1:1810213/230‑1 (MQ=255) tgAAATGTCGCTTCTGGGGGCGGCGCGGGGGGCCGCCCCTGCCACCTTTAT‑GGGCAGGGCGGGGCTTGGCGATTT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGaa < 1:1898271/238‑1 (MQ=255) cgcgTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCGTGGCGATTT‑GGTGGTTGACTGTAAC‑GGCAACCAAACCCGTAAACACCGG‑TTTTGGC‑TTATGCTTCGTGAGGGCATGGGTGGACAAAGAGCGCCGGGGAAGATTTGGTAGGGGGGCGGAGGACAACACCAA‑ACGAAAAAAATCCCGGAAATGGCGCCTAGGCTTGGGGTTGAAAttgtaaaa > 2:1756094/1‑232 (MQ=255) ggggcggcgCGGGTCGCCCCCCCTCCCCCTTTTGG‑GGGCAGGGGGGGGCTGGGGTTTTT‑GGTGCTTCCTGGTACC‑CACACCCGGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGa < 2:135697/236‑1 (MQ=255) gtggtgtcccGCCCCTGCCCCCTTTAG‑GGGCGGGGGGGGGGTGGGCGTTTT‑GTGCCTGACCTGACCG‑GACAACCAGTGGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 2:165352/231‑1 (MQ=255) gcggggCGCCGCCCCTCCCACTTTTAG‑GGGAAGGGGGGGGTTTGGGTTTTT‑GGTGCTTCCCTGTCCC‑GACACCCGGGCGCGAAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGCGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1539416/236‑1 (MQ=255) gcTGGGTGCGGACCCTCCCACCTTTAT‑GGGCATGGGGGGGCTTGGCGTTCT‑GTTCCTTACCTGTCCC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATACCCGAGGAAATTTATc < 1:1307493/239‑1 (MQ=255) gtGGGTGCCGCCCCTGCCACCTTTAT‑GGGCATGGGGGGGCTTGGCGTTTT‑GGTGCTTACCTGTCCC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:303185/237‑1 (MQ=255) gggggTGCCGCCCCTGCCTCCTTTAT‑GGGCAGGGGGGGGTTTGGGGATTT‑GGTGCTTACCTGTCCG‑GACACCCAGTCGCGAAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1115358/236‑1 (MQ=255) cggggTGCCGCCCCTGCCCCCTTGAG‑GGGGAGGGGGGGGTTTGGCGTTCT‑GGTGCTTCCCGGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1432156/236‑1 (MQ=255) aggggTGCGGCCCTTGCCCCCTTTGT‑GGGCATGGGGGGGTTTGGCGTTTT‑GGTGTTTCCCTGTACC‑AACAACCAGTCGGGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1805328/236‑1 (MQ=255) ggggTGCCCGCCCCGCCAACTTTTTGGGGCATGGGGGTGGTGGGGGTTTT‑GGGGATGTCGTGTACG‑GAAAGCCAGTGGCGTATCCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 2:267963/237‑1 (MQ=255) ggggGCCGCCCCTCCCCCTTTTGG‑GGGCGTGGCGGGGTTTGGCGATTT‑GGTGCTTCCCTGTACC‑GACACCCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCaa < 1:1800002/238‑1 (MQ=255) gggTGCGGCCCCTGCCACCTTTAT‑GGGCAGGGGGGGGTTTGGCGCTTT‑GGTGCTTCCCTTTACC‑GACACCCATTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCaa < 1:558120/238‑1 (MQ=255) gggTGCCCCCCCTGCCACCTTTAT‑GGGCAGGGGGGGGTTTGGCGTTCT‑GGTGCTTCCCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCaa < 1:948894/238‑1 (MQ=255) cTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGGGGTCT‑GGTGCCTTCCTGCACC‑GACAACCAGTCGCGTAAACGCC‑G‑TTTTGGCCTGGTGCTCGGTCAGGGCATGGGTGGACAAAGCGCGCAGGAGAAGA‑TTGGGCAGGGGGTGGAAGGGTAACGCAATACGAAAGAAGCTCGCGAACGGGGGCATCGCTTCGGCGGTGAAATGCCAATAACCGAGGAAATTTATCAAGATATATATTGc > 2:643996/1‑239 (MQ=255) cTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGGTCT‑GGTGCTTACCTGTAAC‑GTCCACCAGTCGCGGAACCCCC‑G‑GTTTGGCATGATGCTCGGGCAGGGCATGGATGTACAAAACGCGCAGGGGAAGA‑TTGGTCAGGGGGGGGGAGGCTACCGCAATACGAAAGAAGTCCGCGAACCGGCGCATCGCTTCGGCGGTGAAAAGCCAATAAACGAGGGAAATTATCAAGAATTTTAttta > 2:874546/1‑237 (MQ=255) gCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGGGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGAATTATATTGCgg > 1:685175/1‑239 (MQ=255) gCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGGCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCgg > 1:247936/1‑239 (MQ=255) ttAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGGGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAc > 1:1571671/1‑239 (MQ=255) t‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgc > 1:1141653/1‑238 (MQ=255) gggCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgc > 1:1701597/1‑239 (MQ=255) gCAGGGGGGGGCTTGGTGATTT‑GGTGTTTCCCTGTCCC‑GCAAACCAGTGGCATAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcg < 1:839277/238‑1 (MQ=255) cATGGCGGGGCTTGGCGGTCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTGAGGGCATGGATGTACAAAACGCGCAGGGGAAGA‑TTGGTCAGGGGGGGGAAGGCTACCGCACAACGAAAGAAGACCGCGAACTGGGGCATCGCTTTGGCGGTGAAATGCCCATAACCGAGGAAATTTATCAAGTCTTATATTTTGGAAAAAAagggcgcg > 2:408803/1‑239 (MQ=255) tGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGGGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATaa > 1:24763/1‑192 (MQ=255) tGGCGGGGCTTGGCGATCT‑GGGGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGGGGTGGAAGGCTACCGCAATACGAAAGAAGGCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAATATTATATTGCGGAAAAAACGCGCGCGAg > 1:1636579/1‑239 (MQ=255) cGGGGCCTGGCGATCT‑GGTGCGTACCTGTACC‑GACAACCAGGCGCGGAACCGCC‑G‑TTTTGGCATGATGCCCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGGCAGGTGGGGGAAGGCGAACGCAATAAGAAAGAAAGCCGCGAAATGGCGCATCGCCTCGGCCTTGAAAAGCCAATAAACGAGGAAAATTAACAAATATTATATTTCGGAAAAAAACCGCGAGAggga > 2:1398191/1‑237 (MQ=255) ggtttGGCGTTGT‑TGTGCTTACCTGTACC‑GACAACCAGGCTCTTAACCGCC‑G‑TTTTGACATGATGCTCGGTCAGTGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCACGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGgcagca < 2:50126/236‑1 (MQ=255) tGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGGCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:281073/239‑1 (MQ=255) gggggATGT‑GTTGCTTCCCTGTACC‑AACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1756094/235‑1 (MQ=255) gggCGGTCT‑GGTGCTTCCCTGTCCC‑GCCAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:874546/238‑1 (MQ=255) tggcaattctgTGCTTACCTCTACG‑TCCAACCGTTCTCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTAGTCAGGTGGTGGAATGCTACCGCAATACGAAAGAAGTCCGCTAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCTAGGCAGCATTGa < 1:1097074/229‑1 (MQ=255) gCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACt > 1:592350/1‑239 (MQ=255) tCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACttt > 1:473930/1‑237 (MQ=255) cT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGAC‑C‑TTTTGGCATTATGCTCGGTCAGGCCATGGATGTACAAAGCGCGCAGGAGAAGT‑TGGGTCAGGGGGGGGAAGGCTACCGCAATACGAAGGAATCCCGCGTACTGGCGCATCGCATCGACGTTGAAATGCCGATCACAGAGGAAATTTATCCAGTATtata > 2:862302/1‑200 (MQ=255) | TGCACTGCGGCAAAAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTAT‑GGGCATGGCGGGGCTTGGCGATCT‑GGTGCTTACCTGTACC‑GACAACCAGTCGCGTAACCGCC‑G‑TTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGA‑TTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTT > NC_007779/3857265‑3857733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |