New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 1817916	174 (0.970)	12 (0.070)	6/382	NT	6.4%	intergenic (+74/+184)	katE/chbG	catalase HPII/chitin disaccharide deacetylase
	?	NC_007779	= 1818069	187 (1.120)					intergenic (+227/+31)	katE/chbG	catalase HPII/chitin disaccharide deacetylase

GCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1817668‑1817916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcggcgtgaacCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATGTAAATCATTTGAGGCGGCGCAATTGCGCCGCCTCCCAT  <  NC_007779/1818069‑1817842                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGAT                                                                                                                                                                                                                                                 <  1:879006/238‑1         gtgaggggaGCAAGTTTAAAGCAACAATCAAAATCGCTGACCAGTGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTG                                                                                                                                                                                                                                         <  2:2081720/229‑1         GTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTG                                                                                                                                                                                                                                         <  1:741895/238‑1          TGACGGGCGCAAGTTTAAAGCAACAAGCAAGATCGCTGACCAGGGTGAAGAAGGGAGTGTGGAAGCTGACAGCGCTGACGGTAGTTTGATGGATGAACGGCTAACGCGGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGA                                                                                                                                                                                                                                        <  1:1014023/238‑1                        TTAAAGCAACAAGCAAGATCGCTGACCGGGGTGAAGAAGTGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACCCCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCttatg                                                                                                                                                                                                                         <  2:1657731/239‑6                                ACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATT                                                                                                                                                                                                                  >  2:747937/1‑238                                                                          gcgGACAGCGCTGACGGTAGTTTTATGGATTAACTGCTAACGCTGATGGCAGCACCCCGGGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATa                                                                                                                                                                                                                                                <  2:16075/163‑2                                                                            TGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAAC                                                                                                                                                                     <  1:1861032/239‑1                                                                                                                        TGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAAC                                                                                                                                                                     <  1:257174/195‑1                                                                                                                        TGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAAC                                                                                                                                                                     >  2:257174/1‑195                                                                                                                        TGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAAGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTT                                                                                                                          >  1:1660346/1‑238                                                                                                                                 ACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCG                                                                                                                                                                                                                                              >  2:33236/1‑113                                                                                                                                 ACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCG                                                                                                                                                                                                                                              <  1:33236/113‑1                                                                                                                                                           ATTGAAAAAATTCCTGCCGGATGGGAGGCGGCGCAATTTCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGC                                                                                       <  2:1660346/238‑1                                                                                                                                                            TTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGC                                                                                       <  1:747937/237‑1                                                                                                                                                              GACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTG                                                                                                                                                                                                                                         <  2:1446522/89‑1                                                                                                                                                              GACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTG                                                                                                                                                                                                                                         >  1:1446522/1‑89                                                                                                                                                                                                                 TTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGC                                                                                       >  1:596205/1‑184                                                                                                                                                                                                                 TTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGC                                                                                       <  2:596205/184‑1                                                                                                                                                                                                                     CATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAAC                                                                                                                                                                     <  1:517625/102‑1                                                                                                                                                                                                                     CATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAAC                                                                                                                                                                     >  2:517625/1‑102                                                                                                                                                                                                                                     ttttcgagagGCGGCGGGACCCTTGCATCCGGCGATTTATTCCTACAAAGGCGGCGGAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTTCCTGTTGCGCTTCACTTATCAGGCCTACGGGTTTCCTGCAATATACTGAATTTGCACAGTTTTGTAGGCCGAATAAGTGGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATTTAAATCATTTGAGGCGGCGCAATTGCGC            <  2:2014187/229‑1                                                                                                                                                                                                                                             ATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATGTAAATCATTTGAGGCGGCGCAATTGCGCCGCCTCC     >  1:200615/1‑238                                                                                                                                                                                                                                              gcgGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATGTAAATCATTTGAGGCGGCGCAATTGCGCCGCC        <  2:341551/231‑1                                                                                                                                                                                                                                                CGGGGTGCACCTTACATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATGTAAATCATTTGAGGCGGCGCAATTGCGCCGCCTCCCAT  <  2:1820040/238‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCTAAGATTGACAAAATTCCTGCCTGATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/1817668‑1817916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcggcgtgaacCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTATGTAAATCATTTGAGGCGGCGCAATTGCGCCGCCTCCCAT  <  NC_007779/1818069‑1817842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.