New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	3876427 =	NA (NA)	3 (0.020)	3/388	NT	9.9%	coding (1806/4134 nt)	Y75_RS19225	RHS element protein RhsA
	?	NC_007779	3876545 =	29 (0.160)					coding (1688/4134 nt)	Y75_RS19225	RHS element protein RhsA

CCGTCCGGCAGCATCGTATTCCATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTCATGGTTTTCCGGCTGCCGGTGGCATCTTCCGTTGCGCAGGGTAAGTCACTGTGTGGATTATCATAACGGTAGCGGGTGATATCGCCGTCAGGGGCAGTTTCCTGAATCAGACGGCCCAATTCATCATATTCCCGGCGCAATT  >  NC_007779/3876307‑3876782                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              cgacccGGCGGCATCGTTTTCCATACTGCGGCTTCGCCCGCCGTGTTGGGTTCGGACGGCCTGTCCCCGCGCATCGTACGGTGTCCCGTTTAGGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCGTGGCCCTGGGTGTGTTTCACGGCAATTAACTGTCCACGGCTGTCGTACGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCa                                                                                                                                                                                                                                               <  2:2023274/235‑1 (MQ=11) ccGTCCGGCAGCATCGTATTCCATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCa                                                                                                                                                                                                                                               <  1:443770/239‑1 (MQ=31)   gTCCGGCAGCATCGTATTCCATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGGGTCTTTCACGGCCATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGGGCAc                                                                                                                                                                                                                                              >  1:443461/1‑238 (MQ=14)    acgcggccccgggaaaaccaggccgtggggccttacgggtcggttcctgagtttcaccgactgttccggttatgtacccggttgtgcccatgcccgcttcgggcagatgacggcggtgccccgcgaggaagggcggagtcagtaccgcgaatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgAccg                                                                                                                                                                                                                                            <  2:2033819‑M2/4‑1 (MQ=255)     accggcagccggaaacccatgacgtggagcctttacggtcagttgctgagcttcaccgactgttccggttatgtaacccgttatgaccatgaccgcttcgggcagatgacggcggtgcaccgcgaggaagggctgagtcagtaccgcgcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgAccgc                                                                                                                                                                                                                                           <  1:845877‑M2/5‑1 (MQ=255)     accggcagccggaaaaccatgacgtggagccgttacggtcagttgctgagcttcaccgactgttccgggtatgtaacccgttatgaccatgaccgcttcgggcagatgacggcggtgcaccgcgaggaaaggcagagtcagtaccgcgcacacgacagccgcggacaggtaattgccgtgaaagacacgacgggccaagtaacgcggtatgaatacaacctccgcggggacctcAccg                                                                                                                                                                                                                                            >  2:1538682‑M2/235‑238 (MQ=255)      ccggcagccggaaaaccatgacgtggagccgttacggtcagttgctgagcttcaccgactgttccggttatgtaacccgttatgaccatgaccgcttcgggcagatgacggcggtgcaccgcgaggaagggctgagtcagtaccgcgcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgAccgcc                                                                                                                                                                                                                                          >  1:1515141‑M2/234‑239 (MQ=255)          cagccggaaaaccatgacgtggagccgttacggtcagttgctgagcttcaccgactgttccggttatgtaacccgttatgaccatgaccgcttcgggcagatgacggcggtgcaccgcgaggaagggctgagtcagtaccgcgcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCa                                                                                                                                                                                                                                      >  1:532717‑M2/230‑239 (MQ=255)              tCGTATTCCATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCt                                                                                                                                                                                                                                   >  1:1730637/1‑238 (MQ=31)                   ttCCTTGCTGCGCGTTAGCCGTCCCTGGGTGGTACGGACGGCCTTGCCCCAGCCATCGTACTGTGTCCCGTTTTTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTACCCGGCGATGTTTTATTCAGCCCGCGTTGCATGGCCTTGCGTGTCTTTCACGGCAATTAACTGTCCACGCCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGa                                                                                                                                                                                                                             <  2:1903378/239‑1 (MQ=11)                     ccATCCTGCGCGTTAGCCCGCCCTGCTTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAg                                                                                                                                                                                                                           <  1:848717/239‑1 (MQ=14)                     ccATCCTGCGCCGTAGCCCGCCCTGCGTGGTACGGCGGGCCTTTCCCCCCGCTTCGTGCGGTGTCCCGTTTCTGCGGCCGTCCGGGGCAATGACGGGGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTACCTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAg                                                                                                                                                                                                                           <  2:1183449/239‑1 (MQ=11)                     ccATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAg                                                                                                                                                                                                                           <  1:91303/239‑1 (MQ=31)                     ccATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAg                                                                                                                                                                                                                           <  1:573834/239‑1 (MQ=31)                      cATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGGTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCCCGGCCTTCGTTGGCGCGGTACCGCACCCGCCCTTCCCCCAGGTGGCCCAGCGGCCTCTGCCCGCAGc                                                                                                                                                                                                                          >  2:2070985/1‑239 (MQ=11)                        tACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATTCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCCCCCCCGTCGTCCTCCCCGAGCgg                                                                                                                                                                                                                        >  2:339934/1‑239 (MQ=11)                          cTGCGCGTTAGCCCGCCCTGCGTGGTTCGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCGCTGCGTGTCTTTCACGGCAATTAACTTTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtc                                                                                                                                                                                                                      <  1:856519/239‑1 (MQ=14)                          cTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtc                                                                                                                                                                                                                      <  1:1835360/239‑1 (MQ=31)                          cTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtc                                                                                                                                                                                                                      <  1:2057117/239‑1 (MQ=31)                          cTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtc                                                                                                                                                                                                                      <  1:155704/239‑1 (MQ=31)                           tccgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGTGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtca                                                                                                                                                                                                                     >  1:1184495/3‑239 (MQ=14)                           tGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCgggca                                                                                                                                                                                                                     >  1:1337302/1‑239 (MQ=14)                            gcgcGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGGCATCTGCCCGAAGCggccat                                                                                                                                                                                                                    >  1:457507/1‑239 (MQ=14)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGGCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGGACTGCCTCACCCCTTCCTCGCGGTGCCCCGCCCTCATCTGCCCCAAGCggtccgg                                                                                                                                                                                                                   >  2:764905/1‑236 (MQ=11)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCCCGGCCATTACCTGTCCCCGGCTTTCGGATTCCCGGTACTGAACCAGCCCTTCCTCGCGGGTCGCCCCCGTCACCTGCCCGAAGccggc                                                                                                                                                                                                                      >  2:1023286/1‑232 (MQ=11)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCa                                                                                                                                                                                                                                               >  2:138317/1‑211 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCa                                                                                                                                                                                                                                               <  1:138317/211‑1 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   >  1:356905/1‑239 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   >  1:306523/1‑239 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   >  1:232492/1‑239 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   >  1:1979408/1‑239 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   >  1:1247029/1‑239 (MQ=31)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCCGATGCGCGGTCCTGACTCAGCCCTTCCTCGCGGGGCCCCGCCGTCATCTGCCCGAAGCggacatg                                                                                                                                                                                                                   >  1:1009487/1‑239 (MQ=9)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGGCACCGGCGATGTTGTATTCATACCGCGTTTCCTGGCCCTGCGGGTCTTTCACGGCAATTAACTGTCCACCGCCGTCGTATGCGCGGTACTGACTCCGCCCTTCCTCTCCGTGCACCCCCGTCATCCTCCCGCAGCggtcctc                                                                                                                                                                                                                   >  2:564253/1‑236 (MQ=11)                             cgcgTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGATTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcctg                                                                                                                                                                                                                   >  1:389132/1‑239 (MQ=14)                              tcggtAGCCGGCCCCGCGTGGTCCTGAGGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCGGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCGCCGGCGATGTTGTATTCATTCCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTACCTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatg                                                                                                                                                                                                                   <  2:76336/234‑1 (MQ=11)                                  tAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCCGGTCACCGGCGCTGTTGGATTCATACCGCGTTTCATGGCCCCGCGTGTCTTTCCCCGCCATTAACTGTCCACGGCTTGCGTATGGCCGGTACTGACTCAGCCCTTCCTCGCCGGGCACCGCCGGCATCCGCCCCAAGCggtccgtgtga                                                                                                                                                                                                               >  2:1735021/1‑231 (MQ=11)                                  tAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCggtcatggtcat                                                                                                                                                                                                              >  1:670762/1‑239 (MQ=11)                                  tAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCCCGGTACTGACTCAGCCCTTCCTCCCGGTGCACCCCCGTCATCTTCCCGAAGCggtcctggtcct                                                                                                                                                                                                              >  1:1222634/1‑237 (MQ=2)                                                                                                                        tgcatcgcgaggaggggcagagtcagtaccgcgattccgccagcggtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCATCTGCCCGAAGCGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTc                                                                                                                                                <  2:1483874‑M2/96‑1 (MQ=255)                                                                                                                                  ggaagggctgagtcagtaccgcgcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCATCTGCCCGAAGCGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTCATGGTTTTcc                                                                                                                                      >  1:1483874‑M2/110‑215 (MQ=255)                                                                                                                                                       cgcatacgatagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCa                                                                                                                                                                                                                                      <  1:1706556‑M2/10‑1 (MQ=255)                                                                                                                                                       cgcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCa                                                                                                                                                                                                                                      >  2:1706556‑M2/89‑98 (MQ=255)                                                                                                                                                        gcatacgacagccgtggacagttaattgccgtgaaagacacgcagggccatgaaacgcggtatgaatacaacatcgccggtgacctgACCGCCGTCATCTGCCCGAAACGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTCATGGTTTTCCGGCTGCCGGTGGCATCTTCCGTTGCGCAGGGCAAGTCACTGTGTgg                                                                                        >  1:2065631‑M2/88‑239 (MQ=255)                                                                                                                                                                                                                                               ACCGCCGTCATCTGCCCGAAGCGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTCATGGTTTTCCGGCTGCCGGTGGCATCTTCCGTTGCGCAGGGTAAGTCACTGTGTGGATTATCATAACGGTAGCGGGTGATATCGCCGTCAGGGGCAGTGTCCTGAATCAGACGGCCCAATTCATCATATTCCCGGCGCAAtt  >  2:1751487‑M2/1‑238 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                              CCGTCCGGCAGCATCGTATTCCATACTGCGCGTTAGCCCGCCCTGCGTGGTACGGACGGCCTTTCCCCACGCATCGTACTGTGTCCCGTTTCTGCTGCCGTCCGGGGCAATGACGGCGGTCAGGTCACCGGCGATGTTGTATTCATACCGCGTTTCATGGCCCTGCGTGTCTTTCACGGCAATTAACTGTCCACGGCTGTCGTATGCGCGGTACTGACTCAGCCCTTCCTCGCGGTGCACCGCCGTCATCTGCCCGAAGCGGTCATGGTCATAACGGGTTACATAACCGGAACAGTCGGTGAAGCTCAGCAACTGACCGTAACGGCTCCACGTCATGGTTTTCCGGCTGCCGGTGGCATCTTCCGTTGCGCAGGGTAAGTCACTGTGTGGATTATCATAACGGTAGCGGGTGATATCGCCGTCAGGGGCAGTTTCCTGAATCAGACGGCCCAATTCATCATATTCCCGGCGCAATT  >  NC_007779/3876307‑3876782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.