| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 3,857,513 | A→C | 21.2% | T254P (ACC→CCC) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 3,857,513 | 0 | A | C | 21.2% | 99.5 / 4.5 | 63 | T254P (ACC→CCC) | gpsA | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (34/10); new base C (2/13); total (39/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.88e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCA > NC_007779/3857278‑3857750 | aaGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCg < 1:1411100/239‑1 (MQ=255) ttCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGGGT‑GGCGGTCTGGCGC‑GTCCCCTTTCCGACac > 1:1229145/1‑238 (MQ=255) tCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGTAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCAGGGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGGGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTGTTGGTGCGGCGCGAGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAAc < 2:27259/239‑1 (MQ=255) tCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCGT‑GGCGGTCTGGTGC‑TTACCCTTAACGACaa > 1:279379/1‑238 (MQ=255) aTTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCCTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGGTC‑TTACCCTCACCGCCAACCAACCGCGAAA‑CCCCCGCTTTTGCat > 1:2137145/1‑239 (MQ=255) tGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGGTT‑GGGGGTCTGGTGC‑TTACCTGTACCGGCAACCAGTCGCGTAA‑CCGGCGGTTTGGACTGAAGCTc > 1:664682/1‑239 (MQ=255) cgGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGGTCTGGTGC‑TTACCTGTTCCGACAACCAGTCGCGGAA‑CCGCCGTTTTGGGATGGTGCTCGGTCCGGGCAttgga > 1:971405/1‑235 (MQ=255) ttatggcggtgggTGGGGGGCTGCCGGAGGGTATGGGTTTTGGTGGGAATGGGCGTGCGGCGTTGATACCCGGTGGGCTGGTGGACAGGTGGGTTCTGGGTGGGGCGCTGGGTGCGGCCCCTGCCCCCTTTATGGGCGGGGGGGGGCTG‑GGCGTTGTGGTCC‑TTCCCTGTACCGACACCGAGGGGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAgcgcg < 2:130708/228‑1 (MQ=255) aTTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGGCGCGTAA‑CCGCCGTTTTTGCATGATGCCCGGTCAGGGCATGGATGTACAAAGCGCGCAGGggaa > 1:1079500/1‑239 (MQ=255) aTTGGTGCGGGGATGTCCGACGGTATCGGGTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGGCTTGGTGCGGCGGTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTG‑GGGGACGCCGGGC‑CTTCCTCTACCGACCCCCAGTCTCGGAA‑CCGCCGCTTTGGCATGATGGCCGGGTGCGGACTGGATGCACAAAGCGCGCAGgagga > 2:701213/1‑237 (MQ=255) gggATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAAACAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCa > 1:1664963/1‑239 (MQ=255) tgcccGATGGTTTGGTTTTTGGTGAGAGGGGGCTGACGGCGCGGATGCCCGGGGGGCGGGCTGAAAGGGCGCGTTTTGGTGCGGCGGGGGTTGCCGACCCTGCCCCTTTTGGGGGCGTGGCGGGGCTT‑GGCGTTGTGGTTC‑TTCCCTGTACCGACACCCGGTCGCTTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAggt < 2:710893/235‑1 (MQ=255) tCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGGGCTGGTGC‑CTACCTGTACCGACCACCCGACGCCGAA‑CCGCCGTGTTGGGCTGTCGCTCGGGCAGGGGCTGGAGTGACAAAGAGCGCCGGGGAAGATggggcggggggg > 2:357496/1‑230 (MQ=255) tCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCCT‑TGCGGGCTGGGGC‑CTTCCCCTCCCGCCAACCCATCGCGGAACCCCCCGTTTTGCCGTG‑CGCCCCGTGCGGGGAGGGGCGTACCAAACGCGCGGGGGAAGATTGGTCAggtggg > 2:411035/1‑238 (MQ=255) aCGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGCTCTGGTGC‑TTACCTGTACCGACAAACAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACa > 1:39796/1‑205 (MQ=255) tCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGGGT‑GGGGCTCTGGGGC‑CTACCTTGCCCCCCAACCCATCGCGGAA‑CCCCCGTTTTGGGGTGAGGCTCAGGCCGGGGATGGGGTTAAAAAGCGGCCAGGGGAAAGTTGGTGCGGGGGGGGGAGGcca > 2:1421156/1‑236 (MQ=255) ggTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGGTT‑GGCGGTCTGGTGC‑TTACCTTTAACGACACCCAGGCGCGGAA‑CCGCCGGTTTGGGCTTGTGCCCGGTCCGGGCACGGATTGTCAAAGCGGGCCGGAGAAGATTGGGCGGGGGGGGGGAGGCTaaccccacaa > 2:1621805/1‑230 (MQ=255) ggTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGGGCTGGTGC‑TTACCCGTACCGGCAACCAGTCGCGTAA‑CCCGCGTTTTTGCATGATTCTCGGTCCGGGCAAGGAGGTACAAAGCCCGCAGGGGAAGATTGGGCAGGGGGGGGAAAGGCACCGCAATAc > 2:702415/1‑239 (MQ=255) cTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGgc > 1:459263/1‑239 (MQ=255) cccGTGGGCTGGCTGAAAGGTCGCGTCTGGGGGCGGCGCGGGGGGCCGACCCTGCCACCTTTAGGGGCATGGGGGGGTTT‑GGCGTTCTGGTGC‑TTACCTGTCCCGACAACCAGTCGCGTAA‑CCGTCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGc < 1:1621805/239‑1 (MQ=255) gctgAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCTGACCCTGCCACCTTTATGGGCATGGCGGGGGTT‑TGGGGGCTGGGGCTTTCCCTGT‑CCCACCAACAGTCGCGGTA‑CCGCCGCTTTTGGATGATGGTCGGTGCGGGCACGGAAGGACAACACGCGCCGGGGAAAAATGGGCAGGGGGGGGGAGGGTAACGCCATACGAAAGAAGACCCCCAAATCGCGCATCCCGTCgggccgga > 2:446638/1‑233 (MQ=255) tgAAGTGTCGCGTCTGGGTGGGGCGCTGGGGGCGGACCCTGCCCCTTTTATGGGCATGGCGGGGTTT‑GGCGATTTGGTGC‑TTCCCTGTCCCGACAACCAGTCGGGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGaa < 1:357496/238‑1 (MQ=255) tgtgGCGTCGTGGGCGGGCGCTGGGCGCCGCCCCCGCCCGTTTTGGGGGCGGGGGGGGGCTG‑GGCTTGTTGGTGC‑TCACGGCTCCCGACAACCAGCGGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGcc < 2:783496/238‑1 (MQ=255) cgcgTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑TGCGATCTGGGGC‑TTACCTGTACCGACAACCAGGCGCGGAA‑CCGCCGTTTTGGCATGATGCTCGGGCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATa > 1:1021312/1‑239 (MQ=255) cgcgTCTGGGTGGGGCGCGGGGCGCCGCCCCTGCCCCCTTTATGGGCATGGGGGGGTTT‑GGCGTTCTGGTGC‑TTCCCTGTACCGACACCCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAAt < 1:1640028/238‑1 (MQ=255) gtggggTCCCGCCCCTGCCCCTTTTATGCGCAGGGGGGGGTTT‑GCCGTTTTGTTCC‑TTCCTGGTCCCAAAAACCGGTGGGGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:609057/236‑1 (MQ=255) tggggTCCCGCCCCTCCCACCTTTAGGGGCATGGCGGGGTTT‑GGGTGTTTGGTGC‑TTCCCGTTACCAACAACCTGTCGCGAAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTACGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 2:459263/236‑1 (MQ=255) gtGGGTGCCGACGCCGCCTGCTTTGGGGGGGGGGGGGGGTGT‑GGCTATTTGGTGC‑TTGTCTGTCCAGACGACCGGTCGCTAAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 2:360207/237‑1 (MQ=255) cgggggccggccccTCCCCCTTTTATGGCCGTGG‑GGGGCTTGGGGGGTTTGGTGT‑TTACCGGACCCGAGACCCGGTCGGTTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 2:1079500/227‑1 (MQ=255) cTGGGTGCCGCCCCTGCCCCCTTTAGGGGCATGGCGGTGTTT‑GGGGTTTTGTTGC‑TTCCCTGTCCGGACACCCAGTGGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1881746/238‑1 (MQ=255) cTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGc > 1:4742/1‑239 (MQ=255) ccTTTATGGGCAGGGCGGGGCTT‑GGCGTTCTGGGGT‑TTACCTGTCCCGACACCCAGTGGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATc < 1:1397037/219‑1 (MQ=255) ttATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCCTGGATGTACAAAGCGCGCAGGGGAAGATTGGTCAGGGGGTGGAAGGCTACCGCAATACGAAAGAAGGCCGCGAACAGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAc > 1:1561342/1‑239 (MQ=255) gggCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGGAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAACGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGGTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGGTGAAATTCCAATAACCGAGGAAATTTATCAAGGATTATATTTCg > 1:918902/1‑227 (MQ=255) gCAGGGCGGGGTTT‑GGCGATCGGGTGC‑TTCCCTGTACCGACACCCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAAcgcgcg < 1:1804312/238‑1 (MQ=255) aTGGCGGGGCTT‑TGCGATCTGGGGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑ACGCCGGTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGGGGTGGAAGGCTACCGCAAAACGGAAGAAGTCCGCGAACAGGCGCATCGCTTCGGCGTTGAAATGCCAAAAACCGAGGAAAATTATCAAGACTTATTTTGTGGAAAAAACGCGCGCGa > 2:1487958/1‑239 (MQ=255) aTGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGCCAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGGGGTGGAAgg > 1:500107/1‑131 (MQ=255) aTGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGGGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATaa > 1:1366090/1‑193 (MQ=255) aTGGCGGGGCTT‑GGCGATCTGGGGG‑TTACCTTTACCGGCAACCAGTCGCGTAA‑CCGCCGTTTTTGGATGATGCTCGGTCAGGGCATGGGTGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGGTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAAAAACCGAGGAAATTTATCCAGTATTATATTTCGGGAAAAAcgcgcccca > 2:1804312/1‑235 (MQ=255) ggCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGGGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAgg > 1:145675/1‑239 (MQ=255) ggCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAACGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAg > 1:959259/1‑238 (MQ=255) gttgggcattgtGGTGT‑TTGCCTGTCCCGACAACCAGTGGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGgcagca < 1:611183/227‑1 (MQ=255) gtgtggggttgtGGTGC‑TTAGCTGGACCGACAACCGGGAGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGgcagca < 2:971405/227‑1 (MQ=255) tt‑GGCTATGTGGTGC‑TTACCTGTACCAACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCAtt < 1:1313524/238‑1 (MQ=255) t‑GGCGATCTGGTGC‑TTACCTGTCCCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1674859/239‑1 (MQ=255) tggggttttGGTGT‑TTACCTGACCCAACAACCAGTCGTGTAG‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTCGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1711999/231‑1 (MQ=255) ggggttgtGGTGC‑TTCTCGGTGCGGAGAAGCAGGCGGGTGA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 2:1884150/231‑1 (MQ=255) ggCGATCTGTTGC‑TTCCCTGTACGCACCACCAGCGGGGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGa < 1:1497452/238‑1 (MQ=255) cGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACCAAACGCGCAGGAGAAGATTGGGCCGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCCTCGCTTCGGCGTTTAAATGCCAATAACCGAGGAAATTTATCAAGAATTATATTGCGGAAAAAACGCGCGCGAGGCAGCAtttcctt > 2:1674859/1‑234 (MQ=255) aTCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGcc > 1:1808495/1‑172 (MQ=255) tCTGGTGC‑TTACCTGTCCCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCa < 1:1333309/68‑1 (MQ=255) tCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCa > 2:1333309/1‑68 (MQ=255) tCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACttt > 1:1775218/1‑237 (MQ=255) gTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAgg > 1:2050101/1‑239 (MQ=255) tgtttACCTGTCCCGACACCCAGGCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAgg < 1:411035/235‑1 (MQ=255) tACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGagaa > 1:891459/1‑84 (MQ=255) tACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGAAGCATTGACTTTACTAGGTCGt > 2:199123/1‑238 (MQ=255) aCCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGc > 1:2127498/1‑239 (MQ=255) aCCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGc > 1:1839687/1‑239 (MQ=255) gTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATtata > 1:142431/1‑187 (MQ=255) gTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAgg > 1:2169251/1‑229 (MQ=255) tACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCTTGATGCTCGGTCACGTCATGGCTGCACAAGGAGCTTTGGAGATGATTCGTCAGGTGGTGGAAGGCCACCGCAATACGAAAGAAGTCTGTGAACTGGCGACTCGCTTGCGCGATGAAATGCCAATCACCGAGGCAACTTATGATGTATTATATTGCGGAAAAAACGCTAGCGAGGCAGCATTGATTTTCATAGGTCGTGCACGCa > 2:1414651/1‑239 (MQ=255) tACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCa > 2:1119967/1‑239 (MQ=255) | AAGTTTCCGCGTTTACAGCAATCCGGATTTCATTGGCGTGCAGCTTGGCGGCGCGGTGAAAAACGTTATTGCCATTGGTGCGGGGATGTCCGACGGTATCGGTTTTGGTGCGAATGCGCGTACGGCGCTGATCACCCGTGGGCTGGCTGAAATGTCGCGTCTTGGTGCGGCGCTGGGTGCCGACCCTGCCACCTTTATGGGCATGGCGGGGCTT‑GGCGATCTGGTGC‑TTACCTGTACCGACAACCAGTCGCGTAA‑CCGCCGTTTTGGCATGATGCTCGGTCAGGGCATGGATGTACAAAGCGCGCAGGAGAAGATTGGTCAGGTGGTGGAAGGCTACCGCAATACGAAAGAAGTCCGCGAACTGGCGCATCGCTTCGGCGTTGAAATGCCAATAACCGAGGAAATTTATCAAGTATTATATTGCGGAAAAAACGCGCGCGAGGCAGCATTGACTTTACTAGGTCGTGCACGCA > NC_007779/3857278‑3857750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |