Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_007779	4,179,667	A→T	11.0%	G311G (GGT→GGA)	gspF ←	type II secretion system inner membrane protein GspF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779	4,179,667	0	A	T	11.0%	255.7 / 6.3	88	G311G (GGT→GGA)	gspF	type II secretion system inner membrane protein GspF
Reads supporting (aligned to +/- strand):  ref base A (16/60);  new base T (6/4);  total (23/65)
Fisher's exact test for biased strand distribution p-value = 1.56e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

GGAGTACCGACACGACAATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCAG  >  NC_007779/4179438‑4179904                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                ggAGTACCGACACGACAATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGa                                                                                                                                                                                                                                        <  1:970639/239‑1 (MQ=255)   aGTACCGACACGACAATAAGCAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCAGCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGaa                                                                                                                                                                                                                                       <  1:440616/238‑1 (MQ=255)      aCCGACACGACAATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGtt                                                                                                                                                                                                                                   <  2:640450/239‑1 (MQ=255)             cgacaATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAATTTGG‑GGTTTTTTTC‑GCGGAAGATGAATAGT‑TTTAGCCTGGCGGACGGTTTCTGcc                                                                                                                                                                                                                            >  1:1604448/1‑239 (MQ=255)                caATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCa                                                                                                                                                                                                                         <  1:51271/239‑1 (MQ=255)                          gACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑ATGC‑GGGTTTTTCCAGCGAAAGATGAATGCT‑GTTACCCCGGCGGACGTTCTCTGCCGCATTTGGCAGAc                                                                                                                                                                                                               >  1:1730808/1‑239 (MQ=255)                            cGATCAGTGCCATCGTCATAATTAGTGGTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACg                                                                                                                                                                                                              <  2:1036921/238‑1 (MQ=255)                               tCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGAAA‑ATGT‑GGTGTGTTCCCGCGCAAGAAGAAAGCA‑GTTTCCTCTGCGGACGTTCTCTTCCGCCTTTGCCAGAAGCTgg                                                                                                                                                                                                          >  2:3317/1‑239 (MQ=255)                                        tCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCg                                                                                                                                                                                                <  1:2138946/239‑1 (MQ=255)                                                 tGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGCGGGGAAAA‑TTCG‑GGTTTTTTCC‑GCGAAAAATGAAAGGT‑GTTTTCCTCGGGGACGGTTTCTGCCCCCTTTTGCAGACGCCGGCG‑GAATTCGC‑GGgtgttg                                                                                                                                                                                      >  1:1168611/1‑239 (MQ=255)                                                  gAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGa                                                                                                                                                                                     <  1:367312/239‑1 (MQ=255)                                                    gTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGGAA‑ATTC‑GGGGTTTTGCACCGCAAAAAGGATGGTCGTTCCCCCGG‑GCCCGTTCTCTTCCGCCTGTGCCTGACGCGCGCG‑AATCTTGT‑GGGTGTTGAgg                                                                                                                                                                                   >  2:1724697/1‑239 (MQ=255)                                                     tGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGGAA‑ATTC‑GGTTTTTTTCCGCGTAAAAAGGAGGTTCGTGACCTGGGCGAA‑ATTCTTTTCCACCCTTGCAAGAAACCGGCG‑GATTTCGA‑GGgtgttgtatg                                                                                                                                                                                  >  2:1313370/1‑235 (MQ=255)                                                     tGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGAAA‑TTGC‑GGTTTGTTTCAGCGGAAAAAGAAAGCT‑GTTTACCCAGCGAACGTTTTCTTCCGCATTTTCCCGACGCTGGGG‑GAATTGTA‑GGGTGTTGTGGc                                                                                                                                                                                  >  1:1556210/1‑239 (MQ=255)                                                     tGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGa                                                                                                                                                                                                                                        <  1:1869436/187‑1 (MQ=255)                                                     ggCTGGCTCTAAGGTGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAgg                                                                                                                                                                                   <  2:1798455/237‑1 (MQ=255)                                                        tGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCttt                                                                                                                                                                               <  1:39285/239‑1 (MQ=255)                                                        tGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCttt                                                                                                                                                                               <  1:935817/239‑1 (MQ=255)                                                           cTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCg                                                                                                                                                                             <  2:116786/238‑1 (MQ=255)                                                               aaGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGAAA‑ATGCGGGTTTTTTCCGCCGAAA‑AAGAAAGCT‑GTTACCCTGGCGAACGGTCTTTGCCGCATTTTCCCGACGCCGGGG‑AATTTTGG‑GGGTGTTGGGGGTTTTGgggg                                                                                                                                                                         >  1:63866/1‑238 (MQ=255)                                                                           gTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTcatc                                                                                                                                                              <  1:759299/237‑1 (MQ=255)                                                                             tAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTcatccca                                                                                                                                                           <  1:549461/238‑1 (MQ=255)                                                                             tAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTcatccca                                                                                                                                                           <  1:1304413/238‑1 (MQ=255)                                                                             tAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTcatccca                                                                                                                                                           <  1:1269619/238‑1 (MQ=255)                                                                                  cGATCCGATTTTGTTGGGGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGGTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCca                                                                                                                                                       <  2:2139573/237‑1 (MQ=255)                                                                                    aTCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGGTTGTTTCACCGGAAAATGAATGCT‑GTTACCCCGGCGGACGTTCTCTGCCGCCTTTGCCAGACGCTGGCG‑GATTTTGA‑GGGTGTTTAGGCTTTCGGTGGGCAAATTTATCCCCTCccgcag                                                                                                                                                   >  1:203440/1‑239 (MQ=255)                                                                                     tCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCcagcag                                                                                                                                                   <  1:39843/238‑1 (MQ=255)                                                                                          ttttGTTGGATTGTCTCCTGTTTATCTGCGGCTTTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGATGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTTCCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGa                                                                                                                                              <  2:104012/238‑1 (MQ=255)                                                                                          ttttGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTGCGGTGGACAAATTCATCCCATCCAGCAGAGGGa                                                                                                                                              <  1:1021616/238‑1 (MQ=255)                                                                                          ttttGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTGTCGGTGGACAAATTCATCCCATCCAGCAGAGGGa                                                                                                                                              <  1:346970/238‑1 (MQ=255)                                                                                           tttGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGAcg                                                                                                                                            <  1:1755556/239‑1 (MQ=255)                                                                                                    gtgtCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GTGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGa                                                                                                                                    <  1:1123346/238‑1 (MQ=255)                                                                                                    gtgtCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGa                                                                                                                                    <  2:1884423/238‑1 (MQ=255)                                                                                                         tcCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTTCCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:1126215/239‑1 (MQ=255)                                                                                                         tcCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:1508534/239‑1 (MQ=255)                                                                                                         tcCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:1761759/239‑1 (MQ=255)                                                                                                           cTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaaaa                                                                                                                            <  1:142999/239‑1 (MQ=255)                                                                                                              gTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:3192/234‑1 (MQ=255)                                                                                                                  tCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTaa                                                                                                                     <  1:21870/239‑1 (MQ=255)                                                                                                                   cTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTaaa                                                                                                                    <  1:352722/239‑1 (MQ=255)                                                                                                                    tGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAg                                                                                                                   <  2:896048/239‑1 (MQ=255)                                                                                                                    tGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAg                                                                                                                   <  1:287676/239‑1 (MQ=255)                                                                                                                       ggCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTg                                                                                                                 <  1:1724697/238‑1 (MQ=255)                                                                                                                       ggCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTg                                                                                                                 <  1:126032/238‑1 (MQ=255)                                                                                                                              aCCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGAAA‑ATTC‑GGGTTTTTTCACCCCAAAAAGAATACT‑TTTTCCCTTGCCGACGTTCTCTTCCCCATTTTCCCCACCCCGGCG‑GATTTTTAGGGGTGTTTGGGGTTTC‑GTGGGCACAATCATCCCCTCCCCCCCAGGGGCGCCCCCGGGTTTCAAAATAATTTAAATgacgcgaaa                                                                                                         >  2:1966320/1‑231 (MQ=255)                                                                                                                              aCCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGa                                                                                                                                    <  1:1740868/212‑1 (MQ=255)                                                                                                                                   tAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTg                                                                                                    <  1:2048496/239‑1 (MQ=255)                                                                                                                                    aaTGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTgc                                                                                                   <  1:1880596/239‑1 (MQ=255)                                                                                                                                    aaTGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTgc                                                                                                   <  2:377556/239‑1 (MQ=255)                                                                                                                                    aaTGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTgc                                                                                                   <  1:2098921/239‑1 (MQ=255)                                                                                                                                        tgCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGGAAA‑ATTC‑GGGTTGTTTCCCCGAAAAATGAAAGCT‑GTTTTCCTCGGGAACGTTCTCGTTCCCTTCTGCCATAACCTGGGG‑AAATTTAT‑GGGTTTTGGGGCTTTCGGGTGAGCAAATGATCCCATCCAACGAGGGGACGCCGCGGGGTGTTGAAATACTTAAAATGGGGGGAGAGAGTgcgcgg                                                                                               >  2:823561/1‑237 (MQ=255)                                                                                                                                            gAGCTGCGCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTaa                                                                                           <  1:301331/239‑1 (MQ=255)                                                                                                                                            gAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTaa                                                                                           <  1:1095565/239‑1 (MQ=255)                                                                                                                                             aGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTTC‑GGGGTGTTCCCCCGGAAAAAGAATGCT‑GTGTCCCCGGCGAAAGGTCTCTGCCGCATTTTCCAGACGCCGGCGCAAGTTGAG‑GGGGGTTGGGGCTTT‑GGGGGGGAAAATCATTCCATCCAGCCGAGGGGAGCCGCCGGGTTGCGAAAGAATTTAAAAGTGGGGATAGAGTgcgcggggaat                                                                                          >  2:1237378/1‑232 (MQ=255)                                                                                                                                                             cGCCAGAGGCTACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCggg                                                                          <  1:678810/239‑1 (MQ=255)                                                                                                                                                                    ggCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGAt                                                                     <  1:1083577/237‑1 (MQ=255)                                                                                                                                                                         ccaTGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGa                                                                                                                                    <  1:1933022/169‑1 (MQ=255)                                                                                                                                                                               agagCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTTCCCTGGCGACCGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAAcgcg                                                         <  1:2109343/238‑1 (MQ=255)                                                                                                                                                                                  gCATCATCGGC‑GGGATAA‑TTGC‑GGTTTGTTCCAGCGAAAGAGGAATGCT‑GTTGCCCTGGCGAACGTTCTCTGCCGCATTTGCCAGGCGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGTCGATGAGCGCAACGCgca                                                       <  1:52849/237‑1 (MQ=255)                                                                                                                                                                                  gCATCAGCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCgca                                                       <  1:981181/237‑1 (MQ=255)                                                                                                                                                                                      catcGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACa                                                 <  2:203440/239‑1 (MQ=255)                                                                                                                                                                                                            gTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AAATTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTaa                                                                                                                     >  2:798773/1‑152 (MQ=255)                                                                                                                                                                                                            gTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AAATTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTaa                                                                                                                     <  1:798773/152‑1 (MQ=255)                                                                                                                                                                                                                 ttCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:1758957/138‑1 (MQ=255)                                                                                                                                                                                                                 ttCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              >  2:1758957/1‑138 (MQ=255)                                                                                                                                                                                                                 ttCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTg                                                                                                                 <  2:1365688/151‑1 (MQ=255)                                                                                                                                                                                                                 ttCCAGCGAAAGATGAATGAT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTg                                                                                                                 >  1:1365688/1‑151 (MQ=255)                                                                                                                                                                                                                       cGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGTCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGc                                                                                                       <  2:2085601/155‑1 (MQ=255)                                                                                                                                                                                                                       cGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGTCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGc                                                                                                       >  1:2085601/1‑155 (MQ=255)                                                                                                                                                                                                                       cGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAAcgc                                                          >  1:1539303/1‑200 (MQ=255)                                                                                                                                                                                                                       cGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAAcgc                                                          <  2:1539303/200‑1 (MQ=255)                                                                                                                                                                                                                        gAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGcc                     <  1:1198720/236‑1 (MQ=255)                                                                                                                                                                                                                        gAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGcc                     <  1:771155/236‑1 (MQ=255)                                                                                                                                                                                                                         aaaGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              >  2:931501/1‑130 (MQ=255)                                                                                                                                                                                                                         aaaGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCaa                                                                                                                              <  1:931501/130‑1 (MQ=255)                                                                                                                                                                                                                                 aTGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTg                                                                                                                 <  2:1649679/135‑1 (MQ=255)                                                                                                                                                                                                                                 aTGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCa         >  1:1039666/1‑239 (MQ=255)                                                                                                                                                                                                                                 aTGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGGGGCGGGTATAGCCGCGGTTTAACCa         >  2:1763819/1‑239 (MQ=255)                                                                                                                                                                                                                                 aTGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGAATTGCAAAATACTTAAAGTg                                                                                                                 >  1:1649679/1‑135 (MQ=255)                                                                                                                                                                                                                                  tGCT‑GTTACCCTGGCGAACGTTCTCTTCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGGTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCag        <  1:1795336/239‑1 (MQ=255)                                                                                                                                                                                                                                     t‑GTTTCCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGc     <  1:586580/239‑1 (MQ=255)                                                                                                                                                                                                                                        ttACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTgc                                                                                                   >  2:123947/1‑143 (MQ=255)                                                                                                                                                                                                                                        ttACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTgc                                                                                                   <  1:123947/143‑1 (MQ=255)                                                                                                                                                                                                                                        ttACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCa   >  1:145692/1‑239 (MQ=255)                                                                                                                                                                                                                                         tACCCTGGCGAACTTTCCGTGCGGCATTTGACAGACGCTGGCG‑AAGTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGGGCGGAGATGGCGTCCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTATCCAGAGCCAg  <  2:926821/239‑1 (MQ=255)                                                                                                                                                                                                                                         tACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCa   <  1:2021873/238‑1 (MQ=255)                                                                                                                                                                                                                                         tACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCa   <  1:1418602/238‑1 (MQ=255)                                                                                                                                                                                                                                         tACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCa   <  1:1372080/238‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                GGAGTACCGACACGACAATAAACAGGACGATCAGTGCCATCGTAATAATGAGTGCTGGCTCGAAGATGGAGAGCGTTAAGGCGATCCGATTTTGTTGGAGTGTCTCCTGGTTATCTGCGGCTCTGACCATTAATGTGCCGAGCTGCCCGCTTTTTTCGCCAGAGGCCACCATGTAGAGCATCATCGGC‑GGGAAAA‑TTGC‑GGTTTGTTCCAGCGAAAGATGAATGCT‑GTTACCCTGGCGAACGTTCTCTGCCGCATTTGCCAGACGCTGGCG‑AATTTCGA‑GGTTGTTGAGGCTTTCGGTGGACAAATTCATCCCATCCAGCAGAGGGACGCCGCTGGATTGCAAAATACTTAAAGTGCGGAGATAGCGTGCGCTGTTAATGGCGCAAATCAGCGGGCCGATGAGCGCAACGCGCAGCAACATGGCATGAAAACGGTGGCGGTTATTGCCGCGTTTTAACCAGAGCCAG  >  NC_007779/4179438‑4179904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑