Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 2,016,339 T→C 11.2% I325T (ATC→ACC)  fliF → flagellar basal body M‑ring protein FliF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077792,016,3390TC11.2% 309.4 / 4.3 111I325T (ATC→ACC) fliFflagellar basal body M‑ring protein FliF
Reads supporting (aligned to +/- strand):  ref base T (74/21);  new base C (2/12);  total (76/35)
Fisher's exact test for biased strand distribution p-value = 6.58e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 111 total aligned reads displayed.

AGCGATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGC  >  NC_007779/2016106‑2016572
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         
aGCGATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGc                                                                                                                                                                                                                                       <  1:2108035/238‑1 (MQ=255)
aGCGATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGc                                                                                                                                                                                                                                       <  2:1955608/238‑1 (MQ=255)
aGCGATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCa                                                                                                                                                                                                                                      <  1:690363/239‑1 (MQ=255)
   gATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACg                                                                                                                                                                                                                                    >  1:330116/1‑238 (MQ=255)
    aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATCACGCGCCAATCAGCACGc                                                                                                                                                                                                                                   >  2:1242338/1‑238 (MQ=255)
    aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACgg                                                                                                                                                                                                                                   >  2:73383/1‑237 (MQ=255)
    aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACg                                                                                                                                                                                                                                    >  1:1856126/1‑237 (MQ=255)
    aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGATACGGCGCAGATGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAAGCAACCGG‑CACCTGCGAATAACGAGCCACTCAGCACg                                                                                                                                                                                                                                    >  1:1141596/1‑237 (MQ=255)
      ccTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCt                                                                                                                                                                                                                                 >  1:1042229/1‑238 (MQ=255)
            gCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCaa                                                                                                                                                                                                                          <  1:553198/239‑1 (MQ=255)
              cTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAAt                                                                                                                                                                                                                        <  1:1503666/239‑1 (MQ=255)
                      ggTAACGGGAATATTCACGCCCAGGGTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGCTGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAACCAGCACTCCTCCGCAAACTCAAAATa                                                                                                                                                                                                                 >  2:206263/1‑238 (MQ=255)
                        tAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAAc                                                                                                                                                                                                               >  1:1413553/1‑238 (MQ=255)
                         aaCGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCGAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAAcc                                                                                                                                                                                                              >  1:1639050/1‑238 (MQ=255)
                                      aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTCCC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCCAAATAACCGCCAGCAGCAGGcc                                                                                                                                                                                                >  2:1778376/1‑238 (MQ=255)
                                      aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCg                                                                                                                                                                                                >  1:389364/1‑239 (MQ=255)
                                        gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGTGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATACCGCGCCAATCAGCACGCCTCCGGCAAATCCAAATAACCCCCAGCAGCAGGCGa                                                                                                                                                                                               >  2:2146738/1‑238 (MQ=255)
                                        gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCaa                                                                                                                                                                                                                          <  1:887631/211‑1 (MQ=255)
                                        gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCaa                                                                                                                                                                                                                          >  2:887631/1‑211 (MQ=255)
                                        gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGa                                                                                                                                                                                               >  1:638874/1‑238 (MQ=255)
                                             ggTTGCGGCGCGGCTGCACTGCGCCAGTAAAGACCAAACGGAAGAACAGTATCGCCCTAAGGTTGATGAATCTCATGCGGCGC‑TTCGTTCCCGCCAGG‑TTAATGGGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CGGGGGGGCGCCCG‑GGGGGGGTTGTCGAATCAACCGC‑CCCCTGCGAAAAACGCGCAAATCAGCCCGCCTCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGcacc                                                                                                                                                                                          <  2:834077/238‑1 (MQ=255)
                                             ggTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacc                                                                                                                                                                                          >  1:440658/1‑238 (MQ=255)
                                                aagggCGCGGTTGGACTTCGCCAAAAAAGAACAAACGGAAGAACAGTATCGCCCAAACGGGGATAACTCTCAGGCGGGGC‑TTGGTCCACG‑CAGCATTAATGGGGGCGAGAAAAGG‑GCTTCCGT‑TTAT‑CCGGGCGGCGTCCG‑GGGGGCGTTGCCGAACCAACCGA‑CCCCTGCAAAAACCGCGCCAACCAGCCCCCCCCCGAAAAAAAAAAATAACCGCCAGCAGCAGGCGAGCaccacc                                                                                                                                                                                       <  2:343441/235‑1 (MQ=255)
                                                  cGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc                                                                                                                                                                                    >  1:1733518/1‑239 (MQ=255)
                                                  cGGCGCACGTGGACGTCGCCAGTAAATAACAAGCGGAAGACCACTATCGCCCTGACGGTGAGGAATCTGATGCGGGGT‑TTCGTCCCGCCCGGT‑TTAAGGGGGGCGGGAAAGGC‑GGTTCCGG‑TTCT‑CCGGGCGGCGTACC‑GGGGGGGTTGCCAAACCACCCGG‑CCCCTGCGAAAACCCCGCAAACCAGCCCCCCCCCGAAAAAAAAAAAAATCCGCCAGCAGCAGGCGAGCACCACCAg                                                                                                                                                                                     <  2:754556/238‑1 (MQ=255)
                                                   ggCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCa                                                                                                                                                                                   >  1:879807/1‑239 (MQ=255)
                                                        aGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt                                                                                                                                                                              >  1:780477/1‑239 (MQ=255)
                                                        aGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt                                                                                                                                                                              >  1:140035/1‑239 (MQ=255)
                                                        aGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt                                                                                                                                                                              >  1:1245921/1‑239 (MQ=255)
                                                        aGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGAAGGCGAGCACCACCAGCAATAgc                                                                                                                                                                              >  1:2012378/1‑238 (MQ=255)
                                                           tggctgtCGCAAGTAAGAAACAACGGGAAGAACAGTTTCGCGCAACGGGGGATAAACCTCATGGGGCGG‑TTCGTTCACGCGAGC‑TTAATGAGGGCGAGCAAAGC‑GTTCCCGT‑TTAC‑CCGGGCGGCGTCCC‑GGGGGGGTTGTCGAACCAACCGG‑CACCTGAGAATAACCCGCCAATAAGCACCCCCCGGGCAAACCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg                                                                                                                                                                           <  2:962708/233‑1 (MQ=255)
                                                              aCTTCGCCAGTAAAGACAAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAGGC‑GGTTCCGG‑TTAC‑CCGGGCGGCGTCCC‑GGGGGCTTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGcc                                                                                                                                                                         <  1:42089/238‑1 (MQ=255)
                                                               cTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAACTACCCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgc                                                                                                                                                                       >  2:693827/1‑239 (MQ=255)
                                                               cTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgc                                                                                                                                                                       >  1:18700/1‑239 (MQ=255)
                                                                ttCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCGGG‑TTAT‑CCGGGCGGCGTCCC‑GGGGGCGTTGTCAAATCAACCGG‑CCCCTGCGAATACCGCGCCAATCAGCACGCCTCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgcg                                                                                                                                                                      <  1:73383/239‑1 (MQ=255)
                                                                  cGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTa                                                                                                                                                                    >  1:2009819/1‑239 (MQ=255)
                                                                     cAGTAAGAACCAAACGGAAAAACAGTATCGCCCAAACGGGGAGAACTCTCTGGGGGCGC‑TTCGTCCCCGCCAGC‑TTAAGGAGAGCGAGCAAGGC‑GGTCCGGG‑TTAC‑CCGGGCGGC‑TACCGGGGGGCGTTGCCGAATCACCCGC‑CACCGGCGAATAACGCCCCAATCAGCACCCCCCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATa                                                                                                                                                                                <  2:1687035/224‑1 (MQ=255)
                                                                        tAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGcacac                                                                                                                                                              >  1:925394/1‑239 (MQ=255)
                                                                               cAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgcg                                                                                                                                                                      >  1:1687035/1‑224 (MQ=255)
                                                                                 agcGGAAGAACAGTACCACCGTACGGGTGATGACTCTCCGGCGGCGC‑TTCGTTCACGCCGGC‑TTAAGGAGAGCGAGAAAGGC‑GGTGCCGG‑TTAT‑CCGGGCGGCGTCCC‑GGGGGCGTTGCCGAATCAACCGG‑CACCGGCGAAAAACGCGCCAACCAGCACGCCCCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATg                                                                                                                                                     <  2:168221/237‑1 (MQ=255)
                                                                                  aCGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt                                                                                                                                                                              >  1:1168637/1‑213 (MQ=255)
                                                                                  aCGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGACGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGa                                                                                                                                                    >  1:839026/1‑239 (MQ=255)
                                                                                       agaaCAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCa                                                                                                                                               >  1:2006769/1‑239 (MQ=255)
                                                                                          acatgaccGCCCAAAGGGTAAGAAATCTCTGGCGGCGC‑TTCGTTCCCGCCAGT‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGT‑TTAC‑CCGGGCGGCTTCCG‑GGGGGCGTTGCCAAATCAACGGG‑CACCTGCGAATAACGCGCCAACCACCCCGCCCCCGGAAAAGAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAAAAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAg                                                                                                                                              <  2:440658/230‑1 (MQ=255)
                                                                                              tATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACt                                                                                                                                         >  1:1605339/1‑238 (MQ=255)
                                                                                                tCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCACATCAAAATAACCGCCAGCAGCAGGCCAGCACCACCAGCAATCGTGGGCCGCGTAGCACACAGCGGAACGAAACCAGTAACTACg                                                                                                                                      >  2:184087/1‑239 (MQ=255)
                                                                                                  agacagaatgggatggATCTCTAGCGGGGCTTTGGTCCCCGCCGGT‑TTAATGAG‑GCGGGCCAAGG‑GGGTCCGGTTTCT‑CCGGGGGGCGTCCC‑GGGGGCGTTGCCGAATCACCCGG‑CACCTGCAAATAGCGCGCAAACCGCCCCCCCCCGGGCAAATAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACg                                                                                                                                      <  2:1064674/227‑1 (MQ=255)
                                                                                                        aCGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGca                                                                                                                                                                 >  1:1556902/1‑204 (MQ=255)
                                                                                                        aCGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGaaa                                                                                                                                                  >  1:432272/1‑219 (MQ=255)
                                                                                                        aCGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACTAAGTCGa                                                                                                                               >  1:1689917/1‑238 (MQ=255)
                                                                                                        aCGGGGGTGAATCTGTGGCGCGGC‑TCCGTGCAGGCCCGC‑TTAGTG‑GGGGGGGCAAAGCGGGTTCCGT‑TTTT‑CCGGGGGGCGTACG‑GGGGGGTTTGCCAAACCAACGGG‑CCCCGGCAAAAACCGCCACATCCAGCCCCCCCCGGAAAAATAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGAt                                                                                                                              <  2:1639050/239‑1 (MQ=255)
                                                                                                             gatgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTCGGCCGCGTAGCACACAGTGGAATGAAACCAGTAACTACGAAGTCGATAGCa                                                                                                                          >  1:444853/1‑238 (MQ=255)
                                                                                                             gatgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACAAGCAATAGAGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCa                                                                                                                          >  1:723987/1‑238 (MQ=255)
                                                                                                              atgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATa                                                                                                                                                                                >  1:1433656/1‑183 (MQ=255)
                                                                                                              atgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATa                                                                                                                                                                                >  1:2072361/1‑183 (MQ=255)
                                                                                                              atgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgcg                                                                                                                                                                      >  1:700937/1‑193 (MQ=255)
                                                                                                              atgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc                                                                                                                        >  1:2046484/1‑239 (MQ=255)
                                                                                                              atgaATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGACGCGTAGCACACAGCGGAAGGAAACCAGCACCTACGCAGTCGATCGCAc                                                                                                                         >  2:1351307/1‑238 (MQ=255)
                                                                                                                 aaTCTCGTGCGGCGC‑TTCGTTCCCGCCAGC‑TAAGGGGGAGCGAGAAAGGC‑GGTTCCGT‑TTAC‑CCGGGGGGCGTCCC‑GGGGGCCTTGTCGAACAAACCGC‑CACCTGCAAAAAACCCCCCAACCAGCACGCCCCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCAtt                                                                                                                     <  2:729126/239‑1 (MQ=255)
                                                                                                                  aTCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCg                                                                                                                            >  1:1064674/1‑231 (MQ=255)
                                                                                                                             cgc‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaa                                                                                                         >  1:818278/1‑239 (MQ=255)
                                                                                                                             cgc‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaa                                                                                                         >  1:475273/1‑239 (MQ=255)
                                                                                                                              gc‑TTCGTGCACGCAGGT‑GTAAGGGGGGGGAGCAAGGG‑GGTTCCGG‑TTAT‑CGGGGCGGGTGACG‑GGGGGCGTGGTCGAACCAACGGG‑CACCTGGGAAAAGCGCGCCAATGGGCCCCCCCCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaa                                                                                                         <  2:2006769/238‑1 (MQ=255)
                                                                                                                                           gcgagtttAAGGAGAGGGGGCACAGC‑GGTGCC‑G‑TTATCCCGGGGGGGGACCC‑GGGGGGTTTGTCAAACCAACCGC‑AACAGGAGAAAACCGCGCCAACAAGTACCCCCCCGGAAAATAAAAAAACCCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGc                                                                                             <  2:809682/233‑1 (MQ=255)
                                                                                                                                             ccgtgaaaggggagcgagaAAAGG‑GGTTCGGG‑TTCG‑CCGGCGGGCGTACG‑GGGGGCGTGATCAAACCACCCGA‑CACGGGCAAAAAACAGCCAAATCACCCCCCCACCGAAAATAAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGa                                                                                           <  2:1755883/228‑1 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCa                                                                                                                                                                                                                                      <  1:984367/88‑1 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg                                                                                  >  1:631636/1‑236 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg                                                                                  >  1:1798193/1‑236 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCt                                                                               >  2:1442105/1‑239 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACCACGACGGCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg                                                                                  >  2:1334565/1‑236 (MQ=255)
                                                                                                                                                         agcgagcAAAGC‑GGTTACGG‑CTAT‑CCGGGCGGCGTTCC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGTCTCCGGCAAATCAAAATAACCGCCAGCAGCCATCGAGAACCACCAGCAATAATGGGCAGCCTAGCACACAGCGGAATGAAACAAGTAACTACAAATACGACCGCCCCATTCGTTATACCAAAATGCACGTGAGCACTGAGCAACGTCt                                                                               >  2:931161/1‑239 (MQ=255)
                                                                                                                                                          gcgagcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg                                                                                  >  1:1781898/1‑235 (MQ=255)
                                                                                                                                                             agcAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaa                                                                                                         >  1:1417112/1‑209 (MQ=255)
                                                                                                                                                                       ggtCCGG‑TTTG‑CCGGGCGGCGACCC‑GGGGGGGTGGACAAACCACCCGG‑CACCTGCGAATAACGCGCCAACCAGCCCGCCTCCGACAAACAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGt                                                                   <  2:1798193/236‑1 (MQ=255)
                                                                                                                                                                         tCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgt                                                                >  1:928060/1‑239 (MQ=255)
                                                                                                                                                                          ccGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGaa                                                                                                                                                       >  1:591863/1‑151 (MQ=255)
                                                                                                                                                                              gtagt‑CCGGGCGGCGGACG‑GGGCGCGGTGACGAATCACCCGC‑CACCGACGAACACCGCACCAGACACCCCGCCCCGGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgtggtg                                                            <  2:1070430/235‑1 (MQ=255)
                                                                                                                                                                                tgacgggcgcggcgTACC‑GGGGGCGTTCACAACCCACCCTG‑CACCTGCAAAAAACACCCAGCTCGGCACGCCCGCGGCAAACAAAAAGAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGGCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGACGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGa                                                           <  2:475273/231‑1 (MQ=255)
                                                                                                                                                                                    ccGGGGGGCGTACC‑GGGGGCGTTGT‑GAAACCACCGGCCCCCGGCAAAAACCGCGCAAACCACCCCGCCCCGGGAAAAAAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTa                                                       <  1:693827/239‑1 (MQ=255)
                                                                                                                                                                                      gggCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACa                                                     >  1:1230405/1‑239 (MQ=255)
                                                                                                                                                                                        gcggcgTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACaaa                                                   >  1:531978/1‑239 (MQ=255)
                                                                                                                                                                                        gcggcgTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACaaa                                                   >  1:2097079/1‑239 (MQ=255)
                                                                                                                                                                                          ggcgTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGACTAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCCATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGCTCGCACCATTCGTCATACCAAAATGAACGTGAGCGATGTGCAACGTCTGTCAGTCGCGGTAGTTGTGGACTACaaca                                                  >  2:2168771/1‑236 (MQ=255)
                                                                                                                                                                                            cgTACC‑GGGGGCGTTGGCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCCTCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGCAACTACGAAGTCGATCGCACCATTCCACACCCCCAAATGAACGTGTGCGATGTGCAACGTCCGGCAGTCGCGGTCGTGGCGTATTACACAACCt                                               >  2:1789310/1‑239 (MQ=255)
                                                                                                                                                                                             gTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCtt                                              >  1:1583311/1‑239 (MQ=255)
                                                                                                                                                                                                cc‑GGGGGGGTTGCCAAACAACCCGC‑CACCGGCGAATAACGCCCCAACAACCACCCCTCCGGCAAACAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGcc                                           <  1:1661254/239‑1 (MQ=255)
                                                                                                                                                                                                   ggggggGTGGTCGAATCAACCGG‑CCCCTGCGAAAAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAg                                         <  1:483746/239‑1 (MQ=255)
                                                                                                                                                                                                           tgccaaaacAACCGG‑CCCCTGCAAAAAACGCGCCAATCACCCCCCCCCCGGCAAACAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaa                                  <  1:2148971/230‑1 (MQ=255)
                                                                                                                                                                                                           tGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaa                                  >  1:1884462/1‑238 (MQ=255)
                                                                                                                                                                                                            gTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaaa                                 >  1:1134990/1‑238 (MQ=255)
                                                                                                                                                                                                            gTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAACCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaaa                                 >  2:419672/1‑238 (MQ=255)
                                                                                                                                                                                                                 aTCACCCGG‑CCCCTGCGAATAACGCGCCAATCAGCCCGCCCCCGGCAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTg                           <  1:1242338/239‑1 (MQ=255)
                                                                                                                                                                                                                           cACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAAGGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGcc                                           >  1:2071573/1‑214 (MQ=255)
                                                                                                                                                                                                                            aCCGGCAAATAACGCGCCAATCAGCACGCCTCCGCCAAACCAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCa                 <  1:1778376/239‑1 (MQ=255)
                                                                                                                                                                                                                            aCCAGCGAAACACGCGCCAAGCAGCACGCCTCGGGCAAAACAAAATAACCGCCAGCAGCAGGCGAGCCCCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGGGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCa                 <  2:219354/239‑1 (MQ=255)
                                                                                                                                                                                                                                gCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGa             >  1:900049/1‑239 (MQ=255)
                                                                                                                                                                                                                                gCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCAGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTGTCAGCAACGa             >  2:52925/1‑239 (MQ=255)
                                                                                                                                                                                                                                  aaaTAACGCCCCAATCCGCACGCCCCGGACAAATAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAAc           <  2:1245921/238‑1 (MQ=255)
                                                                                                                                                                                                                                           gcCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGc                                                                                      >  1:37908/1‑155 (MQ=255)
                                                                                                                                                                                                                                           gcCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGc  >  1:1574663/1‑239 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         
AGCGATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGC‑TTCGTTCACGCCAGC‑TTAATGAGAGCGAGCAAAGC‑GGTTCCGG‑TTAT‑CCGGGCGGCGTACC‑GGGGGCGTTGTCGAATCAACCGG‑CACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGC  >  NC_007779/2016106‑2016572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑