| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_007779 | 4,611,582 | A→G | 21.5% | S267P (TCC→CCC) | rsmC ← | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase RsmC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 4,611,582 | 0 | A | G | 21.5% | 124.4 / 4.9 | 56 | S267P (TCC→CCC) | rsmC | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase RsmC |
| Reads supporting (aligned to +/- strand): ref base A (7/35); new base G (11/2); total (19/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTC > NC_007779/4611345‑4611811 | aTAATTCGCCTTTCTGCGCCTGGCGGGTCATAATGGCTCGATACACCTTGAAGCGCCGTGTTTGCGCGATCGCTTCGTGGAGGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCGCCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 2:35324/239‑1 (MQ=255) tAATTACCCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCCCTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGga < 1:1101009/237‑1 (MQ=255) tAAATAACCTTGTGTCGCCTGGCGGTTCATAATGGCGCGATACACCTTGAAGCCCCCTTTTTGCGCGATCACTTCGTGGAAGCCAAATGTATCATCCAGCACGTCCGGATAAGGCAGGAAGGCCTT‑CGCTTCAATTCGCAGCACGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 2:377352/238‑1 (MQ=255) aaCCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATc < 1:1057065/239‑1 (MQ=255) ccTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCat < 1:286874/239‑1 (MQ=255) cttcGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑Caa < 1:409450/239‑1 (MQ=255) cATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAgatgat < 1:426598/216‑1 (MQ=255) cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACACTTCGCAGCTCGCCGCCGCTAATAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATACCATCGTGGAACGGCGGGGTGGGGATTGTCATA‑T‑TAAAACGA‑CCTTTCACCTCGGgaaaa > 1:720421/1‑238 (MQ=255) cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAg > 1:1424191/1‑239 (MQ=255) cgcgATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGATCATA‑T‑CAAAACCA‑CCCTTCAcccagggcaaa > 1:1443341/1‑230 (MQ=255) cTTGAAGCGCCCTGTTTGCGAGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgaga < 1:891636/194‑1 (MQ=255) tGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGGTGAACATT‑T‑CAAAACGA‑CCTTTCCCCTCGGAAAAGACGTTGCTGGcc > 1:507969/1‑238 (MQ=255) gAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCaa < 1:362222/239‑1 (MQ=255) aGCGCCGTGACTGCGCCATAAATTCGTGGAAGTTAACTGTCACCTCCAGCACGTACACATCAGGCAGGAAGGACTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCAGCGTGGAACGGGGGGGTGGAGAGGATCACA‑A‑CAACAAGA‑CCCATACACACGGGAAAAACGTTGCCGGcggcg > 2:1369819/1‑235 (MQ=255) aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag > 1:1570823/1‑188 (MQ=255) aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGgag < 2:1570823/188‑1 (MQ=255) aGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGGAGGGCATA‑A‑CAAAAAGA‑CCTTTCTCCCCCGCAAAAACAATGGTGGCGAAg > 2:1176780/1‑239 (MQ=255) gcCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCCCCTCGGAAAAGACGTTGCTGGCAAAGACt < 1:1369819/239‑1 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATA‑T‑CAAAAAGA‑ACCTTCACCTCGGGAAAAAAGGTGCTGGCAAAAACtt > 1:1717517/1‑238 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTc < 1:888192/239‑1 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTc < 1:368136/239‑1 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTc < 2:556356/239‑1 (MQ=255) ccTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑AGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGTGAGGATTAAA‑T‑CAAAACAACCCTTTCA‑CTCGGGAAAAAAATTTCTGGCAAAAAATTc > 1:1042102/1‑239 (MQ=255) ttttggcggATCACTGCGGTGAAGCCAAATGTCTCATCCAGCACTTCCGGATAAGGCAGGAGGGCGTT‑CGCTACAAGTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCAcc < 2:417969/231‑1 (MQ=255) gTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCAcc < 2:1424191/239‑1 (MQ=255) tttGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTc < 1:29929/235‑1 (MQ=255) aTCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAacac > 1:1032765/1‑238 (MQ=255) gTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCg < 1:623199/239‑1 (MQ=255) aGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCTGGAAGGCGTT‑CGCTACAATTCGCAGCCCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGAGGAGCACATT‑CAAAAGAA‑CCTTTC‑CCCCGGAAAAGACGGTGCTGGGAAACAATTTACCCTTAACACCGTTGGCCGccacg > 2:286550/1‑235 (MQ=255) ccAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAgtgt > 1:1193541/1‑239 (MQ=255) aTGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGGGGGGATGATCATA‑T‑TAAAACAA‑CCCTTCTCCCCGGCAAAAACGTTGTTGGGAAAAACTTCACCTCCAACACCCATGGCCGccacagctgt > 2:222515/1‑229 (MQ=255) tctcATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTc < 1:1354046/205‑1 (MQ=255) ctcATCCAGCACGTCCGGATAAGGCAGGGAGGCGTT‑CGCGCACATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCggc < 2:1490609/239‑1 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGGTGGACACA‑T‑CAAAAAAA‑CCCTTTTCCCCCGAAAAAAAGGTTCTGGGCAAAACCTCTCCTTCAACACACTCGGCCCCCAGGGTTGggcgcgccggctcc > 2:1391609/1‑228 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCat < 1:731918/147‑1 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGATGATCat > 2:731918/1‑147 (MQ=255) cACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGGTGGGGAGGAGCATA‑TCCAAAACAC‑CCTTTC‑CCCCGGCAAAAAAGGTGCTGGCCAAAAACTCATCGTCAACACCACTGACCGCGAGAGTTgcggggcgggactct > 2:22065/1‑233 (MQ=255) aCGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCCCCGCGAAGCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCt < 1:1498350/237‑1 (MQ=255) aCGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGTTCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCt < 1:1176780/237‑1 (MQ=255) cctgagaaGGCGGGAAGGCGTT‑CGCTACAATCGGCAGCTTCGCGCCGCTATTAATATGACGCACCGCCCCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCGCCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 2:976682/233‑1 (MQ=255) aGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCCCCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCag < 2:615080/239‑1 (MQ=255) aggaaggaGGCGTTCCGCGCCAATGCGCAGCTCACCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCag < 2:972994/232‑1 (MQ=255) aaGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACa < 1:23169/237‑1 (MQ=255) aaGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACAt < 2:1032765/238‑1 (MQ=255) cGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCCAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCCCCCGGGCAGAGACATCGccc > 1:1813139/1‑237 (MQ=255) gTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGcac < 1:776188/238‑1 (MQ=255) aGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGt > 1:191893/1‑227 (MQ=255) aGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGt < 2:191893/227‑1 (MQ=255) tAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCa < 2:304488/239‑1 (MQ=255) caccgcaccgCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTAccgcc < 1:834556/178‑1 (MQ=255) gcaccgcGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGGGATGATCATC‑T‑CAAAAAGC‑CCTTTCCCCTCCGGCAAAACGGGGCCGGCAAAAACCTCACCTTTAACACCGCTTGCCGCAAGGGTTGCGGGGCTGGCCTCTACCGCCGGGGGCGCGACACCCCACCAAGGGGGACGAATTTTCTGCGAACAGGGCGCAAAggacaccaacag > 2:404699/1‑229 (MQ=255) cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACa > 1:693535/1‑172 (MQ=255) cGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACa < 2:693535/172‑1 (MQ=255) gggcggcATCCAGGCTGGTTTGCATCCCATCGTGGAAGGGGGGGTTGGGGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 2:1717517/234‑1 (MQ=255) cgccgcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAACCGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAGGACTTCACCTTCAACACCGTTGGCCGCAAGTGTGGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCg < 2:1416496/238‑1 (MQ=255) gcATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATc < 1:55226/239‑1 (MQ=255) ttGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCt < 1:543964/238‑1 (MQ=255) aTCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCg < 1:486208/238‑1 (MQ=255) ccATCGTGGAAGGGGGGGTTGGGGATGATAAAA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCCCCTTCAACACGGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg < 2:1813139/239‑1 (MQ=255) ccATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGtgtg < 1:1450220/239‑1 (MQ=255) cATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGc < 1:843797/239‑1 (MQ=255) aaCGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTa < 1:1806873/238‑1 (MQ=255) agaTGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACTTc < 1:409631/230‑1 (MQ=255) | ATAATTAACCTTTCTTCGCCTGGCGGGTCATAATGGCGCGATACACCTTGAAGCGCCCTGTTTGCGCGATCACTTCGTGGAAGCCAAATGTCTCATCCAGCACGTCCGGATAAGGCAGGAAGGCGTT‑CGCTACAATTCGCAGCTCGCCGCCGCTATTAAGATGACGCACCGCACCGCGAATCAGCGTTTGCGCCGCATCCAGGCTGGTTTGCATCCCATCGTGGAACGGCGGGTTGGAGATGATCATA‑T‑CAAAACGA‑CCTTTCACCTCGGAAAAGACGTTGCTGGCAAAGACTTCACCTTCAACACCGTTGGCCGCAAGTGTTGCGCGGCTGGCTTCTACCGCCGGGGCAGAGACATCGCACAAGGTGAGACGAATTTTCGGCGAATGGCGCGCAAAGGCAACTGAAAGCACGCCCGCGCCACAGCCGACATCCAGCACTTTACCTTTCGTGTGCGGAGTTAACGTC > NC_007779/4611345‑4611811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |